Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02404 ATGATGGACATGAGAAACCAATCTGAGAATTCTCCAAATTTTGAATCTTCCATGCAAGATTCATCATCATATAGAAGTGCCATGTCTATTCAGTCTAGGAGTTCTGGGAGGAATTCAACCAGGGAAGTTACTTTTGGTCACTCAGATTCCAATCCTGTGAGGTATGGTTCAAAGGGTGGTATTGATTCTGAAGTTTTCAGCATGTCACAAAAAGAAATCAGTGATGAAGATGCTAGGTTGGTTTATATTGATGATCCTGAGAAGACAAATGAGAGGTTTGAATTTGCTGGGAATTCAATTCAGACTGGGAAGTACTCGATCCTCACTTTTCTTCCAAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTACGTTTATTTCCTTATAATTGCCATTCTTAATCAGCTTCCTCAGTTAGCTGTTTTTGGGAGGGGTGTTTCTATTTTACCATTGGCCTTTGTTCTTCTTGTTACTGCTGTGAAGGATGCATATGAGGATTGGAGGAGGCACAGGTCAGATAAAGTTGAGAACAATAGGTTAGCATGGGTTTTGGTTAATGGTGAGTTTCAAGAGAAGATATGGAAGGATATTAGAGTTGGTGAGATCATTAAAATCAATGCAAATGAAGCCATTCCTTGTGATTTTGTGTTGCTCTCAACTAGTGACCCTACTGGGGTTGCTTATGTGCAGACTCTTAATCTTGATGGAGAGTCTAATTTGAAGACTAGGTATGCAAAACAAGAGACTCAGTCTAAGTTTCAAGAAAAGGAGAGGTTTAATGGTTTGATTAAGTGTGAAAAACCCAATAGGAATATATATGGGTTTCAGGCTAACATGGAAATTGATGGAAAGAGGTTGTCTCTTGGTTCCTCCAATATTGTCCTTAGAGGTTGTGAACTTAAGAATACCATTTGGGCAATTGGTGTTGCTGTGTATTGTGGCCGTGAGACCAAAGCTATGCTTAACAGCTCAGGAGCTCCATCTAAGAGGAGCCGTCTCGAGACTCGGATGAACTCGGAGATCATCATGCTTTCTTTCTTTCTTGTAGCTTTGTGTACAGTCACCTCAGTTTGTGCTGCTGTTTGGTTAAAGCGCCACAAGGATGAGTTAAATCTCTTGCCTTATTATAGGAAACTGGATGTTTCAGAGGGGAAAGTGGAAAGCTATGAATATTATGGATGGGGATTTGAAATCCTATTCACATTCCTCATGTCAATTATAGTGTACCAGGTCATGATCCCCATATCGTTGTACATTTCTATGGAGCTTGTCCGTGTTGGTCAGGCCTACTTCATGATCAATGACTCCAGAATGTATGATGAGGGAACAAATTCAAGATTTCAGTGCAGGGCCTTGAATATCAATGAAGATGTAGGGCAGATTAAATATATCTTTTCCGACAAAACTGGTACACTGACTGAGAACAAGATGGAGTTTCAATGCGCAAGCATCTGGGGGGTTGATTATGGTTCTGGAAAATCCAGTTTCCAGAATGAGCAAGTTGAATTCTCTGTTCAAGTGGATGGAAAGGTCTTGAAGCCGAAGATGCAGGTGAAAGTTAATCCAGAGCTTTTGCAATTATCAAAAAGTGGATTTGCTAATGAAGAGGGAAAATGGATTCATGATTTCTTTCTAGCACTGGCAGCATGCAATACTACTGTGCCTCTTGTTATTGACTCATCTGATCCTACAGTCAAGTTTATAGATTATCAAGGGGAATCACCAGATGAACAAGCATTGACATATGCTGCCGCCGCCTATGGTTTTACGCTTATAGAACGAACCTCGGGTCACATAGTCATTGATATTCATGGAGAAAGACAAAGGTTCAATGTCTTGGGTATGCATGAATTTGATAGTGATCGGAAAAGGATGTCTGTTATATTGGGGTACAACGACAATTCTGTGAAACTTTTTGTCAAAGGGGCAGATACATCCATGCTTAGTGTGATAGATAAATCGTTGAACACAGACATAATAGAAACAACTAAAAGCCATCTTCACTCTTATTCATCCCTGGGTTTGAGGACACTTGTTATTGGGATGCGGGACTTGAATGCTTCAGAATTTGAGCAATGGCACTTTGCCTTTGAGACAGCAAGTACTGCTTTGATTGGTAGGGCTGCCATGCTTCGCAAGGTTGCTATCAATGTAGAGAACAATCTCTGCATATTGGGTGCAACTGCTATTGAAGATAAGCTACAGCAAGGCGTGCCAGAATCTATCGAGTCTCTAAGGAGTGCGGGTATTAAAGTATGGGTGTTGACTGGGGACAAACGGGAAACTGCCATATCAATCGGCTACTCCTCAAAGCTCCTAACGAGCAACATGACTCAAATTATAATTAAGAGCAACAATAGAGAGTCATGTAGAAGAAGTTTACAAAACGCCCTTGGCATGTCTAGACAAAACATGGCTGCATCTGGGGTTACCAATACCAACTATCCTGAAGGAAGTTCTGATGCTGTCACAACTCCAAGAGCCTTGATTATTGATGGTACCAGCCTTGTATATATTCTTGACAATGAACTTGAAGAAGAGCTCTTTCAACTTGCTAGTCGATGTTCTGTTGTTCTGTGTTGTCGAGTTGCTCCATTGCAAAAAGCTGGGATTGTTGCCCTCGTAAAGAATAGGACAGCCGACATGACTCTAGCCATTGGTGATGGAGCTAATGATGTATCAATGATCCAAATGGCTGATGTTGGAGTCGGCATCAGTGGGCAGGAGGGTCGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGGCAGTTTAGGTTTTTAGTTCCTCTCTTATTGATACATGGGCACTGGAATTACCAAAGACTGGGCTACATGATACTATACAATTTTTACAGAAATGCTATCTTTGTTCTTGTCCTGTTTTGGTATGTGCTCTTCACTGCCTTCACTTTGACAACTGCTATAAATGAATGGAGCAGCATGTTGTATTCAATAGTCTACACTGCATTGCCAACTATTGTTGTTGGTATTATTGACAAGGATCTTAGTAAAAGAACTCTCCTAAAGCATCCCCAGCTTTATGGGGCAGGGCAGAGACACGAGGCCTACAACAAAAAATTATTTTGGTTGACAATGGTCGACACATTGTGGCAAAGCATTGTTGTCTTCTTTGGTCCTCTGTTTGCATATTGGGGAAGCGCTGTAGATGTAGCAAGCATAGGAGATCTTTGGACTCTTTCAGCAGTTATTTTGGTGAATTTGCACTTGGCCATGGATGTTATCAGGTGGAATTGGGTTACTCATGCAGTCATTTGGGGGTCTATCATTGCCACATTCATTTGTGTCATGATTATTGATGCTATACCATCATTTCCTGGTTACTGGGCCATTTTTCATGCTGCAGGCACCGGATTGTTCTGGTTATGTTTGCTTGGAACTGTGATAGCAGCATTGCTTCCTCGTTTTGTTGTAAAATATATTTATCAATATTATTGTCCTAATGATATCCAGATTTCAAGAGAAGCAGAGAAGTATAGTAATCTAAGGGTCAATGAAGGTGGACAGATAGAAATGCATCACATCACAGATGGTCCACAAAGATGA 3564 0.4077 MMDMRNQSENSPNFESSMQDSSSYRSAMSIQSRSSGRNSTREVTFGHSDSNPVRYGSKGGIDSEVFSMSQKEISDEDARLVYIDDPEKTNERFEFAGNSIQTGKYSILTFLPRNLFEQFHRVAYVYFLIIAILNQLPQLAVFGRGVSILPLAFVLLVTAVKDAYEDWRRHRSDKVENNRLAWVLVNGEFQEKIWKDIRVGEIIKINANEAIPCDFVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKQETQSKFQEKERFNGLIKCEKPNRNIYGFQANMEIDGKRLSLGSSNIVLRGCELKNTIWAIGVAVYCGRETKAMLNSSGAPSKRSRLETRMNSEIIMLSFFLVALCTVTSVCAAVWLKRHKDELNLLPYYRKLDVSEGKVESYEYYGWGFEILFTFLMSIIVYQVMIPISLYISMELVRVGQAYFMINDSRMYDEGTNSRFQCRALNINEDVGQIKYIFSDKTGTLTENKMEFQCASIWGVDYGSGKSSFQNEQVEFSVQVDGKVLKPKMQVKVNPELLQLSKSGFANEEGKWIHDFFLALAACNTTVPLVIDSSDPTVKFIDYQGESPDEQALTYAAAAYGFTLIERTSGHIVIDIHGERQRFNVLGMHEFDSDRKRMSVILGYNDNSVKLFVKGADTSMLSVIDKSLNTDIIETTKSHLHSYSSLGLRTLVIGMRDLNASEFEQWHFAFETASTALIGRAAMLRKVAINVENNLCILGATAIEDKLQQGVPESIESLRSAGIKVWVLTGDKRETAISIGYSSKLLTSNMTQIIIKSNNRESCRRSLQNALGMSRQNMAASGVTNTNYPEGSSDAVTTPRALIIDGTSLVYILDNELEEELFQLASRCSVVLCCRVAPLQKAGIVALVKNRTADMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNAIFVLVLFWYVLFTAFTLTTAINEWSSMLYSIVYTALPTIVVGIIDKDLSKRTLLKHPQLYGAGQRHEAYNKKLFWLTMVDTLWQSIVVFFGPLFAYWGSAVDVASIGDLWTLSAVILVNLHLAMDVIRWNWVTHAVIWGSIIATFICVMIIDAIPSFPGYWAIFHAAGTGLFWLCLLGTVIAALLPRFVVKYIYQYYCPNDIQISREAEKYSNLRVNEGGQIEMHHITDGPQR* 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02404 1187 SFLD C1.7: P-type atpase like 449 937 - -
Rops3g02404 1187 Gene3D - 566 700 IPR023299 GO:0000166
Rops3g02404 1187 SUPERFAMILY Calcium ATPase, transmembrane domain M 94 1153 IPR023298 -
Rops3g02404 1187 CDD P-type_ATPase_APLT_Dnf-like 97 1046 - -
Rops3g02404 1187 PRINTS P-type cation-transporting ATPase superfamily signature 465 479 - -
Rops3g02404 1187 PRINTS P-type cation-transporting ATPase superfamily signature 886 905 - -
Rops3g02404 1187 Pfam Cation transport ATPase (P-type) 549 649 - -
Rops3g02404 1187 MobiDBLite consensus disorder prediction 1 53 - -
Rops3g02404 1187 FunFam Phospholipid-transporting ATPase IC 462 474 - -
Rops3g02404 1187 FunFam Phospholipid-transporting ATPase 721 926 - -
Rops3g02404 1187 SFLD p-type atpase 449 937 IPR044492 -
Rops3g02404 1187 Gene3D - 152 322 - -
Rops3g02404 1187 SUPERFAMILY HAD-like 460 941 IPR036412 -
Rops3g02404 1187 FunFam Phospholipid-transporting ATPase 569 702 - -
Rops3g02404 1187 Pfam Phospholipid-translocating ATPase N-terminal 81 146 IPR032631 -
Rops3g02404 1187 ProSitePatterns E1-E2 ATPases phosphorylation site. 467 473 IPR018303 -
Rops3g02404 1187 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 76 1164 - -
Rops3g02404 1187 Pfam E1-E2 ATPase 180 421 - -
Rops3g02404 1187 MobiDBLite consensus disorder prediction 1 51 - -
Rops3g02404 1187 Gene3D - 721 926 IPR023214 -
Rops3g02404 1187 NCBIfam HAD-IC family P-type ATPase 857 972 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops3g02404 1187 SUPERFAMILY Calcium ATPase, transduction domain A 178 319 IPR008250 -
Rops3g02404 1187 NCBIfam phospholipid-translocating P-type ATPase 95 1161 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Rops3g02404 1187 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 471 737 IPR023299 GO:0000166
Rops3g02404 1187 Pfam Phospholipid-translocating P-type ATPase C-terminal 914 1154 IPR032630 -
Rops3g02404 1187 FunFam Phospholipid-transporting ATPase 153 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02404 Rops-Chr3 49098324 49105320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02404 2 1187 Primary Pumps ATPases AT5G04930 69.218 0.0 1728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02404 K14802 - gmx:100784988 1993.39