Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02403 ATGTTCCAACTTAGAGATCCTCCAATCAAGCTTTTTGGAAGTGATATTCACATTCATATTCCCATTAACACAGATTCACACTCTCTCACTCATCAGATTCAGCAACACATCATCATGAATGGACTTGAAGAATCAACCAGCGCTGAAGCGGATGTTCCTTTGAAGGGAGTATCTAGCAGAAAGATTGATCCTCAAGAAGATGCTAATTGTAATTTGAAACTGGTAACCAAAGTAGTTCCTAGAACTAATGAACACAAGACTGCTAAGAGAGAAATTGATAATCAAGAAAAAGTTTTCAAGAGGCCAGACAAGGTCCTACCATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTATTTCAACAATTACAATGTTAACCAACCTAGGCATTTCTGCAAGAATTGCCAAAGATATTGGACGGCTGGGGGAACAATTAGAAATGTTCCTGTTGGTGCTGGTAAGCGCAAAAATAAGCAATCATCTTTGCAGTATTGTCAAATTCCTGTGACAGATTCCAACCATGCTAGTGATAACCATCTTTCATCTAGTGTGTTTCTTGTAGCTTCAAGACCTGTTAAAGAAATAGGGAACATCCCTGGTCTAAGGGATGAAGCTCCTCTTAGTGAATCCTTAGAAAATGTGTTAAATCTCAAGAGCCACACAAAAATTGAAGTGGACTCTTCTACTATCAAAGATAATGGTGAGGAGCCTTCTAGTTCTTCTATGAGATCTGTTGAATCTAGGGAGGATGAACATTCAAAAAATGGAATAGACCAAGTTGGTTTGACACAACAATGTAATGGTTTAATTCCTTTACATCCACTTCATTATTATCCTGTTCCTCCATGGACTTACCAATGGAATCCATGTTGGAATGGTATGGCATTTAGGCCTAGTAGCATAACTTCCAATCTTGCTTACGTGGCAGCTCCTGGCTTCTGCACACCAACAGTAGAATTACCAGTGGCTTCATACGGGGGTTGCTTGCCAAGTTGGGCTGGCCAAAAGGAAGAATTTTCATTGGCTGGATCTACATTTAATGGCATCCCATCACCTTCATCTTCAGTTAGCAACAACATTTGTTCTGGTAATAGGTCTCCAACCTTAGGAAAACATTCTAGAGATGGAAGTACACCAGAAGAAGGTACAATGAAACAGAATCTTTGGGTACCTAAGACTGTAAGAATTAATGATCCAGAAGAGGCTGCAAAGAGTTCTATATGGTCAACTTTGGGAACAAAGTGTGAACATAATAAACCTATTATGAAAGGAAGTGTTTTTAAATCATTTGAACCTAAGTCAAATGGTGGTTCTCATGTTTTAGATGATAATCAAATTCTAAGGGCAAATCCTGCTGCTTTATCTCGCTCTGAATCTTTCCAGGAAAACATGTAA 1398 0.3884 MFQLRDPPIKLFGSDIHIHIPINTDSHSLTHQIQQHIIMNGLEESTSAEADVPLKGVSSRKIDPQEDANCNLKLVTKVVPRTNEHKTAKREIDNQEKVFKRPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGKRKNKQSSLQYCQIPVTDSNHASDNHLSSSVFLVASRPVKEIGNIPGLRDEAPLSESLENVLNLKSHTKIEVDSSTIKDNGEEPSSSSMRSVESREDEHSKNGIDQVGLTQQCNGLIPLHPLHYYPVPPWTYQWNPCWNGMAFRPSSITSNLAYVAAPGFCTPTVELPVASYGGCLPSWAGQKEEFSLAGSTFNGIPSPSSSVSNNICSGNRSPTLGKHSRDGSTPEEGTMKQNLWVPKTVRINDPEEAAKSSIWSTLGTKCEHNKPIMKGSVFKSFEPKSNGGSHVLDDNQILRANPAALSRSESFQENM* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02403 465 MobiDBLite consensus disorder prediction 227 261 - -
Rops3g02403 465 MobiDBLite consensus disorder prediction 358 386 - -
Rops3g02403 465 ProSiteProfiles Zinc finger Dof-type profile. 106 160 IPR003851 GO:0003677|GO:0006355
Rops3g02403 465 PANTHER CYCLIC DOF FACTOR 2 6 464 IPR045174 GO:0003700|GO:0006355
Rops3g02403 465 MobiDBLite consensus disorder prediction 243 257 - -
Rops3g02403 465 MobiDBLite consensus disorder prediction 358 374 - -
Rops3g02403 465 ProSitePatterns Zinc finger Dof-type signature. 108 144 IPR003851 GO:0003677|GO:0006355
Rops3g02403 465 Pfam Dof domain, zinc finger 103 160 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02403 Rops-Chr3 49091958 49094448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02403 94 464 C2C2-Dof Transcription Factor Family AT5G39660 38.619 3.22e-62 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops3g02403 zf-Dof 5.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02403 - - gmx:102666857 555.058