Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02401 ATGGCAAAACCAGTTTCTCATTCACATCTACTCCTTGTAATCTTGTTTCTTTCCATGCATCTTACAGAACAGTTACAATTTTCTCAGTCTCAGTCACTTCTCAAAGTTCAGCAACTTCTTGGTTATCCATCAGCACTAGGCAGCTTAAGCAGCACCGCAGACTATTGCAACATTGAACCTACCTCATATTTGACACTAGTGTGCTATGAGGATAATTTGAGTCAGTTGCATGTTGTTGGCAACAATGAGTTTACTCCATTGCCTCAAGACTTCTCTTCAGACACTCTATTTGCCACACTAGGGGGTCTATCAAGCTTGAAAGTCCTCACTTTGGTTTCTCTTGGTCTTTGGGGTCCTCTACCTGAAAGCATTGGTCAATTGTCTTCTTTGGAAATACTTAACATTAGCTCAAATCACTTCAATGGAGCCATCCCAGTTCAACTTTCACATCTGAGGGACTTGCAGTCAGTGGTACTTGATGATAACAACTTCAGTGGTGAAATTCCCAACTGGGTTGGCTCACTTCAAGGTTTGGCTGTGCTTAGTATGAAGAAGAATTGGTTTAGTGGGAGCTTACCAATTTCAGTGAATACCCTTCTTACTCTGAGAGTGTTAGATCTATCAAATAATCAGCTATCTGGGGAACTACCTCATCTTCACAATTTGGCAAACCTTCAAGTTCTTCACTTAGAAAACAACACATTTGGACCTCATTTTCCTTCTCTGCCTACCAAGTTAGTTTCTCTTGTGCTTAGAAACAATAGCTTTAGGCTTGGGATCCCTTCTAATTTAAGTTCTTTCTATCAGCTCCAAAAGCTGGACCTTTCATTGAATGGTTTTGTGGGGCCATTTCTGCCATATTTATTGTCACTGCCTTCCATCAATTACCTTGATATTTCTTCAAATAAACTCACTGGGATGCTTTTCAAGAATTTGTCATGCAATGATGATCTCAACTTTGTAAATATATCTTCAAATCTTTTGAAAGGGGAACTTCCCACTTGTTTAAGTCCAAAATCCAAGGTTGTTTTGTATGCTAGAAACTGTTTATCAAATGAAGATCAGCACCCTTCCGATTTCTGCAGCAATGAGGCTCTTGCAGTGAATATCATACCCCAACATCAGAAGCATAAAAGAACAACAAGTAAAACAGTGTTTGTATCAGGTATGGGAGGTGTTTTTGTTGGAGTACTAATTGTTGGAGTTGTTATCTTGGTCATTAGCCAGGTTCATAAAAAACAAGTTGTGAAAACACCTTCAATGTCCACATTGGAGCATGTTATTAGTCAGGTACACAAAGAGGATGAAGAGAAAACTTCTACAAGGTCCATTATGGAACATATCATCAAAAGGGTTCCTGACAAACAGGCTGTGAAAACACTAACAAGATCCATAAAGGAGCATGTCATGAGCCGAGTGAATAACAAACGTGTAGCAAAAACACCTACAAGGTCTATAATAGAGTGTGTATCATCGGTTAACACTGCAAAACTACTCAAAGATGCAAGATATATATCACAAACAATGAAGATGGGAGCCAGCCTTCCTGCTTATAGGACCTTTGCTTTGGATGAACTTAAGGAAGCTACAAATAATTTTGATCCATCATGTCTTATAAGTGAAGGTCCACATGGTCAGATATATAAAGGGTTGCTCTCTGATGGAATGCATATTGCTATAAGAGGTGTGAAAATTAGAAAGAGACACAGCCCTCAAACCTATATGCACCATGTTGAGTTGATTTCCAAACTAAGGCATTCACACTTGGTTAGTGCTCTTGGGCATTCTTTTGAGTGCAACCAGGATGATTCAAGTGTCAACACTATATTTCTCATATTTGAGTATATTCTAAATAGAAGTTTAAGAAGCTGTGTTTCTGGACCTTCTGGTGAAAAGCTTTCTTGGACACAGAGAATAGCAGCTGCAATTGGTGTGGTGAAAGGGATTCAATTTTTGCACACAGGGATAGTTCCAGGACTATATTCAAATAATCTGAGGATAACAGATATTCTTTTGGATAACAATCATAATGTTAAAATAAGCAGTTATAATCTGCCACTCTATGCTGAAAACAAAAGATTGGTCAGTAATGGAACTTCCCCTGGATTAAAAGGAAATCCCCAAGCAAGGATAAAGGATGCAGACAAGAATGATGTCCATGACATTGGAGTAATCTTGCTAGAAATCATCCTGGGACGACCATTAATGTTCCACAATGAATTACAAGTAAGCATCAAAACTGATGATATAGCTAGAAGGAGTATTGTTGACCCAGTAGTTCATAAGGAATGTTCAGATGAATCATTAATGACAATGATGGAGATATGTGTAAGGTGTCTCTCTAGTGAACCAACTGATAGGCCTTCTGTGGAAGATGTTTTATGGAATTTGCAGTTTGCTGCACAAGTTCAGAATACATGGAGAAGAGACTCAAATGATCATAGAGACTCTCCTGCATCATCTTCCAGGGACACATAA 2478 0.3866 MAKPVSHSHLLLVILFLSMHLTEQLQFSQSQSLLKVQQLLGYPSALGSLSSTADYCNIEPTSYLTLVCYEDNLSQLHVVGNNEFTPLPQDFSSDTLFATLGGLSSLKVLTLVSLGLWGPLPESIGQLSSLEILNISSNHFNGAIPVQLSHLRDLQSVVLDDNNFSGEIPNWVGSLQGLAVLSMKKNWFSGSLPISVNTLLTLRVLDLSNNQLSGELPHLHNLANLQVLHLENNTFGPHFPSLPTKLVSLVLRNNSFRLGIPSNLSSFYQLQKLDLSLNGFVGPFLPYLLSLPSINYLDISSNKLTGMLFKNLSCNDDLNFVNISSNLLKGELPTCLSPKSKVVLYARNCLSNEDQHPSDFCSNEALAVNIIPQHQKHKRTTSKTVFVSGMGGVFVGVLIVGVVILVISQVHKKQVVKTPSMSTLEHVISQVHKEDEEKTSTRSIMEHIIKRVPDKQAVKTLTRSIKEHVMSRVNNKRVAKTPTRSIIECVSSVNTAKLLKDARYISQTMKMGASLPAYRTFALDELKEATNNFDPSCLISEGPHGQIYKGLLSDGMHIAIRGVKIRKRHSPQTYMHHVELISKLRHSHLVSALGHSFECNQDDSSVNTIFLIFEYILNRSLRSCVSGPSGEKLSWTQRIAAAIGVVKGIQFLHTGIVPGLYSNNLRITDILLDNNHNVKISSYNLPLYAENKRLVSNGTSPGLKGNPQARIKDADKNDVHDIGVILLEIILGRPLMFHNELQVSIKTDDIARRSIVDPVVHKECSDESLMTMMEICVRCLSSEPTDRPSVEDVLWNLQFAAQVQNTWRRDSNDHRDSPASSSRDT* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02401 825 ProSiteProfiles Leucine-rich repeat profile. 201 223 IPR001611 GO:0005515
Rops3g02401 825 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 106 815 - -
Rops3g02401 825 Gene3D Phosphorylase Kinase; domain 1 492 615 - -
Rops3g02401 825 FunFam Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 244 366 - -
Rops3g02401 825 ProSiteProfiles Protein kinase domain profile. 533 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02401 825 SUPERFAMILY Protein kinase-like (PK-like) 513 799 IPR011009 -
Rops3g02401 825 Pfam Leucine Rich repeats (2 copies) 202 233 IPR025875 -
Rops3g02401 825 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 507 615 - -
Rops3g02401 825 PRINTS Leucine-rich repeat signature 202 215 - -
Rops3g02401 825 PRINTS Leucine-rich repeat signature 291 304 - -
Rops3g02401 825 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 97 192 - -
Rops3g02401 825 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 616 813 - -
Rops3g02401 825 Pfam Protein tyrosine and serine/threonine kinase 539 794 IPR001245 GO:0004672|GO:0006468
Rops3g02401 825 Gene3D Ribonuclease Inhibitor 28 148 IPR032675 -
Rops3g02401 825 Gene3D Transferase(Phosphotransferase) domain 1 617 822 - -
Rops3g02401 825 SUPERFAMILY RNI-like 66 351 - -
Rops3g02401 825 Gene3D Ribonuclease Inhibitor 149 240 IPR032675 -
Rops3g02401 825 Gene3D Ribonuclease Inhibitor 241 355 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02401 Rops-Chr3 49080285 49085792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02401 42 822 Miscellaneous Gene Families AT3G03770 47.930 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Rops3g02401 PK_Tyr_Ser-Thr 1.4e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02401 - - gmx:100797327 1319.29