Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02366 ATGGGACATGTGGACACTGGAAAAACTAAACTGCTTGATTGTATTCGAGGTACTAATATTCAAGAGGGTGAGGTTGGTGGTATCACACAACAGATTGGGGCAACATACTTTCTTGCTGAGAACATACGGGAAAGAACAAAGGAACTCAAAGCTGATGCAAAGCTGAAAGTTCCTGGGCTACTGGTCATTTATACCCCAGGACATGAATCATTCACTAACTTGAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATCCATGGCTTAGAGCAACAAACAATAGAATCACTCAATCTATTAAAAACGAGGAACACTGAATTCATTGTTGCCTTGAATAAGGTTGACAGGCTTTATGGGTGGAAAACATGTCGCAATGCTCCTATTGTTAAAGCAATGAAGCAGCAGTCTAAGGATGTTCAAAATGAATTTAATAAGAGGCTCATCAAGATTGTTACACAATTCAAGGAACAAGGGCTAAATACTGAGTTGTATTATAAAAACAATGAAATGGGAGAAACATTCAGCATTGTGCCGCTGACAAGTGCAATAAGTGGTGAAGGAATCCCAGATTTGTTATTACTGTTGGTTCAGTGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAGTGTACTGTTTTGGAGGTTAAGGTTGTTGAAGGCCATGGAACTACTATTGATGTTGTCTTAGTTAATGGTGTTCTTCATGAAGGAGAACAAATAGTTGTCTGCGGAATGCAGGGGCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTTAAGGAATACATTATGGAAGGACTTGCTGGGAAGACAGTCTTGCTTGTGACTCATGAAGTTGATTTCCTTCTACCATTTGATTCTGTTTTGTTGATGTCAGATGGGGAAATCCTACAAGCTGCACCACCAATATGA 969 0.3973 MGHVDTGKTKLLDCIRGTNIQEGEVGGITQQIGATYFLAENIRERTKELKADAKLKVPGLLVIYTPGHESFTNLRSRGSGLCDIAILVVDIIHGLEQQTIESLNLLKTRNTEFIVALNKVDRLYGWKTCRNAPIVKAMKQQSKDVQNEFNKRLIKIVTQFKEQGLNTELYYKNNEMGETFSIVPLTSAISGEGIPDLLLLLVQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVKEYIMEGLAGKTVLLVTHEVDFLLPFDSVLLMSDGEILQAAPPI* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02366 322 Gene3D - 1 215 IPR027417 -
Rops3g02366 322 NCBIfam small GTP-binding protein domain 1 137 IPR005225 GO:0005525
Rops3g02366 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 280 IPR027417 -
Rops3g02366 322 Pfam Elongation factor Tu domain 2 233 290 IPR004161 GO:0005525
Rops3g02366 322 CDD IF2_eIF5B 1 207 - -
Rops3g02366 322 Gene3D Translation factors 216 299 - -
Rops3g02366 322 Pfam Elongation factor Tu GTP binding domain 1 206 IPR000795 GO:0003924|GO:0005525
Rops3g02366 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 320 IPR027417 -
Rops3g02366 322 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 280 IPR015760 -
Rops3g02366 322 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 210 IPR000795 GO:0003924|GO:0005525
Rops3g02366 322 FunFam Eukaryotic translation initiation factor 5B 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02366 Rops-Chr3 48417106 48421881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02366 1 279 Eukaryotic Initiation Factors Gene Family AT1G76810 88.172 1.08e-173 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02366 K03243 - gmx:100814640 523.857