Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02319 ATGCCACCGATCTTTGCAAGAAGTGCTTTTGATATTGTCTTGACAGAACCTGGATTAAGTGTTATCATTAGTGCCGTTTTGACTAGCATAGCTATTTTCCAAAGAATGAAAAACTACACGATATATGCAGTATCCGTCACCATCCGTATAGTGTTTGGTTTCATGTTCATTGCACTGATCTGGAAATTCGACTTCTCTCCTTTCATGGTTTTGATTATTGCTATTCTAAATGATGAGTATCATCTCGGGCGACTTAAGGCAAAGATAGCAAAACTAAGGACACAATCAAGTTTAGCTTTTGATGTGCTTATTGCAATTGGTCCACCCATTTGA 333 0.3784 MPPIFARSAFDIVLTEPGLSVIISAVLTSIAIFQRMKNYTIYAVSVTIRIVFGFMFIALIWKFDFSPFMVLIIAILNDEYHLGRLKAKIAKLRTQSSLAFDVLIAIGPPI* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02319 110 PANTHER CALCIUM-TRANSPORTING ATPASE 6 83 - -
Rops3g02319 110 Gene3D - 18 78 - -
Rops3g02319 110 Gene3D - 6 17 IPR023214 -
Rops3g02319 110 SUPERFAMILY Calcium ATPase, transmembrane domain M 31 78 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02319 Rops-Chr3 46686652 46687776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02319 6 78 Primary Pumps ATPases AT2G24520 93.151 4.21e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02319 K01535 - thj:104813515 136.732