Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02309 ATGGCGTCAAGGCCAGTACAGAGGCCTGATTTACCTAATATGAATAACAATTGGTCAAAAGAAGCTCAAAAGACAGATCATAGTTGTGCAAACTTGACAAATGATTCAGAGGGTCATTCCATAAAGGTGAATCAAGCAACCAAAGAAGCAAAGGTGAATCTAGAATCAAAAGATGGTTTCACAAATGAGTATGGAGGTGGACAGATAGACCAGGTTTCTAAAAATAATGCAAAGATGACAAATAAACCAGCTTCTAAACCTCAGAAATTAGAATCACCTAGGAGGAACATGTCTGAATTTTCCACTCTTCAACGCCAAAATCCAAGTTCAAGGATGCCTTTAAATTCTGACCCTTCAACCGCTTCATCAGGAGTAACAACAGGAATTGCAAGAGGATTTCCTATACCAACAAGAAGTTCCAATCAAGGCCGAGGGAGTGGCACTAACTCCCGGAGTGATAGTTTAGACAGCACAAGTGCACCAGTTAAGCCACACACTGGTGGTGATGTAAGATGGGATGCAATTAACAAGGTTTCTAGGGGTTCAAGTCTTGATCTTAGTCATTTCAGGCTTCTAAAACGTGTAGGGTATGGAGACATTGGAAGTGTATATCTTGTGGAACTTAAAGGAACTGGTGCCTTCTTTGCCATGAAAGTAATGGATAAGGCTTCACTTGCAAGTAGAAACAAGCTTCTTAGAGCACAAACAGAAAGGGAGATTCTTGGACTTCTTGACCACCCTTTCTTGCCAACTTTATATTCTTATTTTGAAACTCAGAAGTATTACTGTTTGGTCATGGAATTCTGTACTAGTGGTAGTCTGCATTCTCTTCGAATGAAGCAGCCTAACAAGCATTTCACTGAAGAAGCTGCACGGTTAGTGACTTAA 888 0.4043 MASRPVQRPDLPNMNNNWSKEAQKTDHSCANLTNDSEGHSIKVNQATKEAKVNLESKDGFTNEYGGGQIDQVSKNNAKMTNKPASKPQKLESPRRNMSEFSTLQRQNPSSRMPLNSDPSTASSGVTTGIARGFPIPTRSSNQGRGSGTNSRSDSLDSTSAPVKPHTGGDVRWDAINKVSRGSSLDLSHFRLLKRVGYGDIGSVYLVELKGTGAFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETQKYYCLVMEFCTSGSLHSLRMKQPNKHFTEEAARLVT* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02309 295 Pfam Protein kinase domain 190 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02309 295 Gene3D Phosphorylase Kinase; domain 1 182 295 - -
Rops3g02309 295 MobiDBLite consensus disorder prediction 66 87 - -
Rops3g02309 295 MobiDBLite consensus disorder prediction 1 38 - -
Rops3g02309 295 SUPERFAMILY Protein kinase-like (PK-like) 183 293 IPR011009 -
Rops3g02309 295 MobiDBLite consensus disorder prediction 94 161 - -
Rops3g02309 295 PANTHER FLIPPASE KINASE 1-RELATED 30 292 - -
Rops3g02309 295 MobiDBLite consensus disorder prediction 58 170 - -
Rops3g02309 295 FunFam Serine/threonine-protein kinase D6PK-like 187 272 - -
Rops3g02309 295 MobiDBLite consensus disorder prediction 9 38 - -
Rops3g02309 295 ProSiteProfiles Protein kinase domain profile. 189 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02309 Rops-Chr3 46517674 46518732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02309 144 293 AGC Kinase Gene Family AT3G12690 73.684 8.33e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Rops3g02309 Pkinase 9.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02309 - - gmx:100802478 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02309 3 46517674 46518732 Rops3g02309 3 46517674 46518732 ECH