Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02300 ATGGGAAACTCTTCTTCTAGAAAGCGTGACCCTCAAATTTCCTCCACCATAAGCAGAACCTTGTCACCGCCACCGCAGGCACCGCCGGAACCACCACCACCCACGTCTTTCAATATGCATCGTGGTTCGGGGAAGTATGCTCTGATTCGTGATAACTTCACTTCACTTCAACAGGTTACAACTGCCTTGAGGAATGAAGGTTTGGAATCCTCAAATGTTGTCCTTGGAATTGATTTCACAAAAAGCAATGAATGGACTGGTAGAATTTCATTCAATAATAAAAGCCTGCATGCTATTGGAGATACACCTAACCCCTATGAGAAAGCCATTTCTATTATTGGCAAGACTTTGGCTCCCTTTGATGATGACAACTTGATTCCTTGTTTTGGCTTTGGAGATGCTACAACTCATGATCACGAAGTGTTTAGCTTTCACGCTGATAATTCATCTTGCCATGGATTTGAGGAAGTTTTGGCTTGCTATCAAAAAGTCGTTCCAAACTTGAGACTTTCAGGACCAACTTCCTATGCTCCAGTGATTGAGGCTGCAATAGACATAGTTGAGAAAACTCATGGCCAATTCCATGTCTTAGTTATTGTTGCAGATGGCCAGGTTACAACAAATGCCAACTCTGAAGATGGAGAACTCAGTCCTCAAGAAGAGAGGACAATCAAAGCAATTGTTGATGCAAGTTCATATCCACTTTCTATTGTTCTGGTTGGAGTTGGTGATGGACCCTGGGATGACATGAAAAAGTTTGATGACAAGATACCGGCACGCGATTTTGACAACTTCCAGTTTGTTAACTTCACTGACATAATGTCTAAGAGAGCAAGCTCCTCTGAGAAAGAAGCTGCTTTTGCTCTGGCTGCTCTAATGGAGATACCTTTCCAATATAAAGCAGCCATTGAACTTGGACTACTTGGTCGTACAACAGGAAGGGCAAAGAAAATGGTTCCAAGACCTCCTCCAGTTCCTTATTCTCGGCCTGTGCCACCAGCTCATTTTCTGAGAAACATGCCAGCATCCATGGAAGATGAACGAAACCAATCGGTCTGCGCAATTTGTTTGACCAATCAAAAGGACTTGGCCTTTGGATGTGGTCACATGACTTGCAGAGGTTGTGGATCCAGGTTAAGCAATTGTCCCATATGTCGAGAGAGAATCACCAATCGTCTTAGGGTGTTTGCAGGCTGA 1197 0.4369 MGNSSSRKRDPQISSTISRTLSPPPQAPPEPPPPTSFNMHRGSGKYALIRDNFTSLQQVTTALRNEGLESSNVVLGIDFTKSNEWTGRISFNNKSLHAIGDTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDHEVFSFHADNSSCHGFEEVLACYQKVVPNLRLSGPTSYAPVIEAAIDIVEKTHGQFHVLVIVADGQVTTNANSEDGELSPQEERTIKAIVDASSYPLSIVLVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTDIMSKRASSSEKEAAFALAALMEIPFQYKAAIELGLLGRTTGRAKKMVPRPPPVPYSRPVPPAHFLRNMPASMEDERNQSVCAICLTNQKDLAFGCGHMTCRGCGSRLSNCPICRERITNRLRVFAG* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02300 398 MobiDBLite consensus disorder prediction 1 21 - -
Rops3g02300 398 MobiDBLite consensus disorder prediction 1 42 - -
Rops3g02300 398 Pfam Zinc finger, C3HC4 type (RING finger) 350 390 - -
Rops3g02300 398 SUPERFAMILY RING/U-box 348 392 - -
Rops3g02300 398 ProSiteProfiles Zinc finger RING-type profile. 353 386 IPR001841 -
Rops3g02300 398 Pfam Copine 95 308 IPR010734 -
Rops3g02300 398 PANTHER COPINE FAMILY PROTEIN 1 38 373 - -
Rops3g02300 398 SUPERFAMILY vWA-like 71 253 IPR036465 -
Rops3g02300 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 397 IPR013083 -
Rops3g02300 398 SMART ring_2 353 385 IPR001841 -
Rops3g02300 398 SMART VWA_4 70 273 IPR002035 -
Rops3g02300 398 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02300 Rops-Chr3 46252712 46263400 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02300 K16280 - gmx:100795579 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02300 3 46252712 46263400 Rops3g02300 3 46252712 46263400 ECH
Rops7g01822 7 29009279 29018117 Rops3g02300 3 46252712 46263400 PCT