Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02296 ATGCATACCCAATTGTATATTTGCACCTTACTTTCGTTCGATGAGTGCAAGAAATTTGCCAAGGTCCACAAGGTGTTTGGAGCCGACAATGTGAGCAAGATCCTCATTGAAGTTCCGGAGGAGCGGAGGGAAGACACGGTGAATTCAGCGGCTTATGAGGCTGAAGCAAGGCTTAGAGACCCAGTTTATGGTTGCATAGGTGCCATAGCAACTGTTGCAAAGGAAGATGGTGGATGA 237 0.4726 MHTQLYICTLLSFDECKKFAKVHKVFGADNVSKILIEVPEERREDTVNSAAYEAEARLRDPVYGCIGAIATVAKEDGG* 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02296 78 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 72 - -
Rops3g02296 78 ProSiteProfiles LOB domain profile. 1 78 IPR004883 -
Rops3g02296 78 Pfam Lateral organ boundaries (LOB) domain 12 74 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02296 Rops-Chr3 46132469 46132705 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02296 19 75 AS2 family AT3G11090 77.193 1.58e-27 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops3g02296 LOB 1.2e-19 No_clan