Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02295 ATGAGTCCAAAAGACACGGCCTTATGGAAGGCTCAACAAAGTCTTATGACTCTTTTCAAGCGGTGTTCCACCGTGAAACATTTGAAAGAGATACATGCTCGTATAATCAAGACTGGATTTGATCAGAACCTCTTTGTAGTTGGAAAGATTATTGAGTTTTGTGCGGTATCCAGAGATGGAGACATGAACTACGCAATCTCGGTATTGGACAGGATCAAGAAACCAGATACATTTCTTTGGAACACCATGATTAGGGGCTTTGGTAAGACTAGCCAACCTGAAAAGTCCATTGACTTCTACAGGAGAATGCAGGAAAAAACATTTGTGGCAGCAGACAGTTTCAGTTTCTCTTTCATTCTTAAAATTATCGGTGGATTGGGATCAGTTACACTGGGGAAGCAGCTGCACTGTACCATAATTAAACTTGGTCTTGAAACTCATACCTTTGTAAGGAATCCCTCATACATATGTTTGAGTGGCATGCAACCTGATGATGCCACTTTGGTAGTAACCCTCTCAGCATGTGGTGCAATAGGAGCACTATTCCACGTTGCTTCCGCCATTGCTACTCCCAATTCTTCACTCCTTAGCGAAGAAGCTTTCAATGGTGTCGGCCATGGCTTCTCCAATGAGTTCGCCTCCGAAACCGATGAATCTTCTTCTCCTGCTAACGTCGAAGAAGAACTCGACATTTCCAAGCTCGGTTTGCCCTCACACCTCAGAGATATCATTGCTCGTGCAAAGACTGGGACATGGAAAACATTAGCATTTGGGATTCCATTTATTAAAGTTCTCACTGAAGATGAGCAAGCAGGTTCTCACAGATTATTGACAGAATATTCTAATCAAAGACTAGGAGCCAGAGGAGCATCAGAGGTGAAGCAACATGTTTTCTTCAAGGATATAAACTGGGACACGCTTGCCAGGCAGAAGGCTGCATTTGTTCCTGCTTCTGAGAGTGCTCTAGATACCGTTACTTCACTAGTCGCTATTCATGGAATACTTCTGATGGCCTTGTATATCCAGCAAGTGATGTTGAGGATTCTAGGGATGCTGATAGCTTAA 1065 0.4319 MSPKDTALWKAQQSLMTLFKRCSTVKHLKEIHARIIKTGFDQNLFVVGKIIEFCAVSRDGDMNYAISVLDRIKKPDTFLWNTMIRGFGKTSQPEKSIDFYRRMQEKTFVAADSFSFSFILKIIGGLGSVTLGKQLHCTIIKLGLETHTFVRNPSYICLSGMQPDDATLVVTLSACGAIGALFHVASAIATPNSSLLSEEAFNGVGHGFSNEFASETDESSSPANVEEELDISKLGLPSHLRDIIARAKTGTWKTLAFGIPFIKVLTEDEQAGSHRLLTEYSNQRLGARGASEVKQHVFFKDINWDTLARQKAAFVPASESALDTVTSLVAIHGILLMALYIQQVMLRILGMLIA* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02295 354 Gene3D Tetratricopeptide repeat domain 11 238 IPR011990 GO:0005515
Rops3g02295 354 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 152 IPR046960 GO:0003723|GO:0009451
Rops3g02295 354 Pfam PPR repeat 79 106 IPR002885 -
Rops3g02295 354 Gene3D Transferase(Phosphotransferase) domain 1 261 317 - -
Rops3g02295 354 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 76 110 IPR002885 -
Rops3g02295 354 NCBIfam pentatricopeptide repeat 79 106 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02295 Rops-Chr3 46111530 46118222 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02295 186 324 AGC Kinase Gene Family AT3G17850 45.638 2.18e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02295 - - ccaj:109796512 228.409