Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02291 ATGAAGGGTTATGAACCAAGGTCAAGCTCTTCTTGTGCAGCCTGCAAGTTCTTGAAAAGAAGATGCATACCCAATTGTATATTTGCACCTTACTTTCGTTCTGATGAGTGCAAGAAATTTGCCAAGGTCCACAAGGTGTTTGGAGCCAGCAATGTGAGCAAGATCCTCATTGAAGTTCCAGAGGAGCAGAGGGAAGACACGGTGAATTCACTGGCTTATGAGGCTGAAGCAAGGCTTAGAGACCCAGTTTATGGTTGCATAGGTGCCATAGCACTGTTGCAAAGGAAGATGGTGGATGATTTCATTCAAATCCCATATATATTTTGA 327 0.4343 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVDDFIQIPYIF* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02291 108 Pfam Lateral organ boundaries (LOB) domain 11 97 IPR004883 -
Rops3g02291 108 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 97 - -
Rops3g02291 108 ProSiteProfiles LOB domain profile. 10 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02291 Rops-Chr3 46021509 46021835 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02291 1 99 AS2 family AT3G11090 79.798 1.43e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops3g02291 LOB 1.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02291 - - gmx:100777635 202.601