Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02289 ATGAGTCCAAAAGACACGGCCTTATGGAAGGCTCAACAAAGTCTTATGACTCTTTTCAAGCGGTGTTCCACCGTGAAACATTTGAAAGAGATACATGCTCGTATAATCAAGACTGGATTTGATCAGAACCTCTTTGTAGTTGGAAAGATTATTGAGTTTTGTGCGGTATCCAGAGATGGAGACATGAACTACGCAATCTCGGTATTGGACAGGATCAAGAAACCAGATACATTTCTTTGGAACACCATGATTAGGGGCTTTGGTAAGACTAGCCAACCTGAAAAGTCCATTGACTTCTACAGGAGAATGCAGGAAAAAACATTTGTGGCAGCAGACAGTTTCAGTTTCTCTTTCATTCTTAAAATTATCGGTGGATTGGGATCAGTTACACTGGGGAAGCAGCTGCACTGTACCATAATTAAACTTGGTCTTGAAACTCATACCTTTGTAAGGAATCCCTCATACATATGTTTGAGTGGCATGCAACCTGATGATGCCACTTTGGTAGTAACCCTCTCAGCATGTGGTGCAATAGGAGCACTATTCCACGTTGCTTCCGCCATTGCTACTCCCAATTCTTCACTCCTTAGCGAAGAAGCTTTCAATGGTGTCGGCCATGGCTTCTCCAATGAGTTCGCCTCCGAAACCGATGAATCTTCTTCTCCTGCTAACGTCGAAGAAGAACTCGACATTTCCAAGCTCGGTTTGCCCTCACACCTCAGAGATATCATTGCTCGTGCAAAGACTGGGACATGGAAAACATTAGCATTTGGGATTCCATTTATTAAAGTTCTCACTGAAGATGAGCAAGCAGGTTCTCACAGATACCGTTACTTCACTAGTCGCTATTCATGGAATACTTCTGATGGCCTTGTATATCCAGCAAGTGATGTTGAGGATTCTAGGGATGCTGATAGCTTAAGTGGCAGCGGTAGTTGCTTGAACAATCACCAAGATGAAGTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATATCAGCCACTGCCACTTCAAAGCGGACAAAAACACCTAGGAATGACAACTCTTGTAGATTTGGGAAGTTGATTGAAATTCATTTCAGCACAATGGAGAAAATTTGCGAGGCTAAAATTCAAACCTCATTCACTACAAGAATTTTGGTTTTTTGCGGCGGTTTGAAAGGCCATTTTGCTGCGGTTTGA 1200 0.425 MSPKDTALWKAQQSLMTLFKRCSTVKHLKEIHARIIKTGFDQNLFVVGKIIEFCAVSRDGDMNYAISVLDRIKKPDTFLWNTMIRGFGKTSQPEKSIDFYRRMQEKTFVAADSFSFSFILKIIGGLGSVTLGKQLHCTIIKLGLETHTFVRNPSYICLSGMQPDDATLVVTLSACGAIGALFHVASAIATPNSSLLSEEAFNGVGHGFSNEFASETDESSSPANVEEELDISKLGLPSHLRDIIARAKTGTWKTLAFGIPFIKVLTEDEQAGSHRYRYFTSRYSWNTSDGLVYPASDVEDSRDADSLSGSGSCLNNHQDEVVGDEEEKLAEGIKLYAISATATSKRTKTPRNDNSCRFGKLIEIHFSTMEKICEAKIQTSFTTRILVFCGGLKGHFAAV* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02289 399 Pfam PPR repeat 79 106 IPR002885 -
Rops3g02289 399 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 152 IPR046960 GO:0003723|GO:0009451
Rops3g02289 399 Gene3D Kinesin motor domain 339 388 IPR036961 -
Rops3g02289 399 Gene3D Tetratricopeptide repeat domain 11 235 IPR011990 GO:0005515
Rops3g02289 399 NCBIfam pentatricopeptide repeat 79 106 IPR002885 -
Rops3g02289 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 379 IPR027417 -
Rops3g02289 399 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 76 110 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02289 Rops-Chr3 45990336 45998328 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02289 348 391 Myosins gene family AT4G27370 57.447 6.80e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02289 - - ccaj:109796512 228.409