Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02276 ATGGACTTTCTCACGGAGCTGGCAAAAGAAGTTGTGTCAAACCTTGGAGATTTGGTCGTGGAGTCTACCATCAAGCATTTTAGATATATGATCCATCACAAAAATATCATAGCCAATTTGAAAGATGAACATGAGAAGTTAAAAGGTATGAAAGAAGCATTACAGGGGAGGGTGGATGCAAAAAGAAGGAATGGACATGAAATTGCACCTAACGTGCAAAAATGGCTCTACGATGTGGGAGCTATTGAAAATGAGTTACAAATATTATATGAAAATGAAGTGAACAAGAACAAGAAATGTTTTGATGGGAAGTGTCCAAATTTGACATCTAATTACTCATTGGGCAAGCGAGCCACTAAACGAAAAGAATATATTGCAAGTTTGATGGAGGAAGAAAACAAATTTCAACACATATCCTATCCTAAAGCTCCACCCCCTCTTGGATCTGCCTTTGCAGAAGACATTAAGAGCTTGAAATCCAGAAATAAAATTATATCAGAGATCATAGAAAAACTGAAGGATGATAATTTTAAAAGGATTAGTGTTTATGGGATGGGTGGAGTGGGAAAAACCACACTAATAAAAGAACTAATTCAAATTGTAGAAAAAAATAAAATATTTAGCATGGTTGTGATGGCAGTGGTATCTCAAAATCGAGATTATGAGAAGATTCAAAATCAAATTGCTGATGGTTTGGGCTTGGGATTGACGGGGCAGAGTATAGAAGGAAGAGCAAGACAATTACTTCAAAGGTTGAATGAAATTGACAAGGTCCTAATAGTGTTGGATGATGTGTGGCATGTGCTTGATTTTGAGTACATTGGACTTCCTTCTCTAAAACATCAGAAAGGTTGCAAAATCTTATTCACATCACGAGAAGAAACAGTGTGTCGAAACATGGGAAGTCAAGAGAATTTCCTTATTTCTGTTTTGTCTAATGATGAAGCCTGGTATCTATTTCAGGTGATGGCAGGGGATGTTGTAAATAAACCTGACATCCATCCGATAGCAGAAAAGATCGTAAAGGAATGTGCAGGCTTACCCCATGCCATTGTGATTGTTGGAAAGGCACTTCAAAATGAAGAAAAGCCTATGTGA 1098 0.3716 MDFLTELAKEVVSNLGDLVVESTIKHFRYMIHHKNIIANLKDEHEKLKGMKEALQGRVDAKRRNGHEIAPNVQKWLYDVGAIENELQILYENEVNKNKKCFDGKCPNLTSNYSLGKRATKRKEYIASLMEEENKFQHISYPKAPPPLGSAFAEDIKSLKSRNKIISEIIEKLKDDNFKRISVYGMGGVGKTTLIKELIQIVEKNKIFSMVVMAVVSQNRDYEKIQNQIADGLGLGLTGQSIEGRARQLLQRLNEIDKVLIVLDDVWHVLDFEYIGLPSLKHQKGCKILFTSREETVCRNMGSQENFLISVLSNDEAWYLFQVMAGDVVNKPDIHPIAEKIVKECAGLPHAIVIVGKALQNEEKPM* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02276 365 Coils Coil 155 175 - -
Rops3g02276 365 FunFam Probable disease resistance protein At1g61300 147 305 - -
Rops3g02276 365 Pfam NB-ARC domain 163 361 IPR002182 GO:0043531
Rops3g02276 365 Coils Coil 37 57 - -
Rops3g02276 365 Gene3D - 148 308 IPR027417 -
Rops3g02276 365 SMART AAA_5 176 321 IPR003593 GO:0016887
Rops3g02276 365 PRINTS Disease resistance protein signature 179 194 - -
Rops3g02276 365 PRINTS Disease resistance protein signature 344 358 - -
Rops3g02276 365 PRINTS Disease resistance protein signature 252 266 - -
Rops3g02276 365 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 28 360 - -
Rops3g02276 365 Gene3D - 310 365 IPR042197 -
Rops3g02276 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 360 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02276 Rops-Chr3 45370142 45371239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02276 176 364 WRKY Transcription Factor Family AT5G45050 25.500 2.21e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02276 - - lja:Lj1g3v4058580.1 479.944