Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02258 ATGGTTTCTCTCACGGGAAAATCTAAAATGGGCTCAACGCGAGCCTCTGTAGGTGGCCAATCTCGTCCAAGTGTGGGCGGTAGGAGTTTCAAGGTATTTTCAGAAAATGAACGGATTAAAGTTGGTGATGGGATCAAGACATCTACAAGAGAAATGGGTACAACTTCTAGAAGGACTACTACAGTGACTAACAAAGGGGTTATTCTGAATAGTGCCAATAATCGAAAGATGAAGGGTGGTCTCACAAATATGGAGAAAAGTAGTGGCAAATATGGTACTTCTGTAAATATGAATGTGAGAAAGGCATTGGCTGATGTCACCAATTCTCAAGGAAACTCTGCAACAGCTATTAGGCTTAATAGCTCCAAAATAAAGGTTTCAGCAGGTTCAAGCACTAAAATAGTGGGTGTCTCTTTGAGGAAATCGTTCATGGGAAGAGTGCAAAGAAATACTAGTCAAGCTGAACAGTTAGATGCTCCCAATAGAGTAGGAACAGATTTGAGGGCATCTTTAGATGATCAGAAGAATAATACAAGTGGAGGTCAATCAGTTGTTATAAAGGAGAGGTTTTCAAGGAAGCCTATGCTACCAACAACTACAAGCAATTCAAGGAAATCTTTACCAGTACCAAGGAGGGTAATCAGGGCAGACATAAGTAACACAAAGGAAAATGCTGGAAGTTCTGAAACAATCAAAGGCCAAAGTGGTCTCCCGACTAAGGCAACAGCAGGCAGAAAAGTTAGTTCCCAACTAATTAATGCAAGAAGCCATCTATGGAAGAATCGAGTGAGTGATGGCTTTGTTCAAATGGTTCAAACTAATGTTTCACAAGCATCCTCAAGGAAGTCCACCAAGCCTATTGTTAAGACCACACTCAAGGCTTCTTCGTCTCAAAGGACTTTAAAATCTAAATCCATATCCGGTCAGAACAAATCAAAATTAACCGCTGCAATGTCATCTAAGGATGAGGAAACAGTTTCTTTGTCTCTTCCTGAGAATGGTTTAGTGATAGTCTCTGATGATGCAAATCTAAGACTTCTTCCATCTGATGGAGAGAGCAACCTGAGAACAGATTTGTCAGAGTCCATTCCAAGGAAAAAGTCCACCCGCCGAAAGTCTTATACAACTTCATTAATGGAAAGATCTAAGTTTCTCAAGGAAAGTGGTGAAGTTGGGAAGGAGGATAACCTACCAAATATAGATAATGAATGTAATCAACTGGAAGTTTCTGAATACATTGATGAGATATATCAGTACTATTGGGTTACTGAGGCACATAGTAAATCTCTGGCAAATTACATGTCAATTCAGACAGACATTACTCCTCATATGCGGGGCATATTGATCAACTGGCTAATTGAAGTACACTTCAAATATGATTTGATGCCAGAAACACTGTATCTCACAGTTGCATTGTTTGATCAATATCTTTCCCAAGTGACCATCAAAAAGACTGATACGCAGTTAGTTGGTCTTACAGCACTTATGCTGGCTTCAAAGTATGAGGATTTTTGGCATCCGAGGGTCAAAGATTTAATTAGCATCTCAGCCGAGTCATATACTAGAGATCAAATGCTAGAAATGGAGAAGCTTATTCTTAGAAAATTGAAGTTCCGTCTCAATTCTCCTACTCTTTACGTTTTTATGGTGAGGTTTCTCAAGGCTGCACAATCAGATACGAAGCTTGAACACATGGCATTCTTTCTTATGGACCTATGCTTAGTAGAATATGAAGCTTTGGCATTCAAGCCATCATTACTATGTGCTTCAGCTCTCTATGTTGCACGTTGTACACTGCAAATAACCCCACCATGGACCCCACTGCTTCACAAGCATGCACGTTATGAAGTTTCACAGATAAGGGATTGTGCTGATATGATCTTGAAATTCCATAAAGCTGTTGGGAAGGGAAAGTTAACAGTTACATATGAAAAATACTCCAGACAGGAATTCAGTGGGGTTGCAGCAGTGAAACCGTTGGATAGGCTTCCTCTGTGA 1998 0.4009 MVSLTGKSKMGSTRASVGGQSRPSVGGRSFKVFSENERIKVGDGIKTSTREMGTTSRRTTTVTNKGVILNSANNRKMKGGLTNMEKSSGKYGTSVNMNVRKALADVTNSQGNSATAIRLNSSKIKVSAGSSTKIVGVSLRKSFMGRVQRNTSQAEQLDAPNRVGTDLRASLDDQKNNTSGGQSVVIKERFSRKPMLPTTTSNSRKSLPVPRRVIRADISNTKENAGSSETIKGQSGLPTKATAGRKVSSQLINARSHLWKNRVSDGFVQMVQTNVSQASSRKSTKPIVKTTLKASSSQRTLKSKSISGQNKSKLTAAMSSKDEETVSLSLPENGLVIVSDDANLRLLPSDGESNLRTDLSESIPRKKSTRRKSYTTSLMERSKFLKESGEVGKEDNLPNIDNECNQLEVSEYIDEIYQYYWVTEAHSKSLANYMSIQTDITPHMRGILINWLIEVHFKYDLMPETLYLTVALFDQYLSQVTIKKTDTQLVGLTALMLASKYEDFWHPRVKDLISISAESYTRDQMLEMEKLILRKLKFRLNSPTLYVFMVRFLKAAQSDTKLEHMAFFLMDLCLVEYEALAFKPSLLCASALYVARCTLQITPPWTPLLHKHARYEVSQIRDCADMILKFHKAVGKGKLTVTYEKYSRQEFSGVAAVKPLDRLPL* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02258 665 MobiDBLite consensus disorder prediction 349 374 - -
Rops3g02258 665 SMART cyclin_7 450 534 IPR013763 -
Rops3g02258 665 SMART cyclin_7 547 629 IPR013763 -
Rops3g02258 665 FunFam putative cyclin-B3-1 isoform X3 539 664 - -
Rops3g02258 665 Gene3D - 429 535 - -
Rops3g02258 665 SUPERFAMILY Cyclin-like 543 662 IPR036915 -
Rops3g02258 665 PANTHER CYCLINS 366 647 IPR039361 -
Rops3g02258 665 CDD CYCLIN_CCNB1-like_rpt1 409 538 - -
Rops3g02258 665 Gene3D - 536 663 - -
Rops3g02258 665 SUPERFAMILY Cyclin-like 405 541 IPR036915 -
Rops3g02258 665 MobiDBLite consensus disorder prediction 359 374 - -
Rops3g02258 665 MobiDBLite consensus disorder prediction 296 325 - -
Rops3g02258 665 MobiDBLite consensus disorder prediction 1 23 - -
Rops3g02258 665 MobiDBLite consensus disorder prediction 223 244 - -
Rops3g02258 665 MobiDBLite consensus disorder prediction 1 28 - -
Rops3g02258 665 FunFam Cyclin N-terminal domain containing 2 430 538 - -
Rops3g02258 665 SMART Cyclin_C_2 543 660 IPR004367 -
Rops3g02258 665 Pfam Cyclin, N-terminal domain 415 541 IPR006671 -
Rops3g02258 665 Pfam Cyclin, C-terminal domain 543 658 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02258 Rops-Chr3 44911047 44922181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02258 25 665 Core Cell Cycle Gene Families AT1G16330 44.822 1.45e-166 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02258 K21777 - gmx:100808850 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02258 3 44911047 44922181 Rops3g02258 3 44911047 44922181 ECH