Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02249 ATGTATGCCACCGATCTCTCCGCCTATTGTCGTCTGGTGTTTCGCTGCTTCAAGAGCTTCTGGGTCTTGATCATATTGATCATTGTCTATGAATATGTGGGCTCATCCTTTATCAGTGAAAGTTTTGTTTTTGTTTTTGGTGGGGTTGTTTTTTTGGTGGAGTATTCTGTGGTTGGTAAAGGAATTTCAGGTCTTGCTGGTGTTGTCTATGGATTCTTGGGTGGATTGACTCTTATATGTGCTGCTGCTTGCATTTACTTGTCAGTTAAGCCTTCTGCTTTTATGGTTGAGTTTGTGTTATCTTCTGGATTGGTTTTCAAGGCCACTGCTGCCATCCCCAACCCCCAGAAGAGGCCTGCGTTGGAGACATCTTCAAGATTGCGTCCGGTTAAGGTTTCCGCTACCGACAACAGCAGAAAGTTTCGTGGCGTCCGGCAGAGACCCTGGGGGAAGTGGGTGGCGGAGATTCGAGCAAGAGGGGTGAGACAATGGTTAGGTACCTACGACACTGCAGAGGAAGCTGCAATGGCCTATGACAATGCTACCATTAAGCTTCGAGGTCCTGATTCTTTAACAAACATGCTCGCTCCACCGCAGAGGGAAACACCACCATCATCATCAGAGATAGTTTCGGTGAAACCAGAAATGAAAATTGTATGA 660 0.4652 MYATDLSAYCRLVFRCFKSFWVLIILIIVYEYVGSSFISESFVFVFGGVVFLVEYSVVGKGISGLAGVVYGFLGGLTLICAAACIYLSVKPSAFMVEFVLSSGLVFKATAAIPNPQKRPALETSSRLRPVKVSATDNSRKFRGVRQRPWGKWVAEIRARGVRQWLGTYDTAEEAAMAYDNATIKLRGPDSLTNMLAPPQRETPPSSSEIVSVKPEMKIV* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02249 219 PRINTS Ethylene responsive element binding protein signature 161 177 IPR001471 GO:0003700|GO:0006355
Rops3g02249 219 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700|GO:0006355
Rops3g02249 219 MobiDBLite consensus disorder prediction 197 219 - -
Rops3g02249 219 FunFam Ethylene-responsive transcription factor 2 139 196 - -
Rops3g02249 219 Gene3D AP2/ERF domain 139 195 IPR036955 GO:0003700|GO:0006355
Rops3g02249 219 CDD AP2 140 193 IPR001471 GO:0003700|GO:0006355
Rops3g02249 219 SMART rav1_2 140 201 IPR001471 GO:0003700|GO:0006355
Rops3g02249 219 SUPERFAMILY DNA-binding domain 140 194 IPR016177 GO:0003677
Rops3g02249 219 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 133 205 - -
Rops3g02249 219 ProSiteProfiles AP2/ERF domain profile. 140 195 IPR001471 GO:0003700|GO:0006355
Rops3g02249 219 Pfam AP2 domain 140 187 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02249 Rops-Chr3 44792534 44806466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02249 94 202 AP2-EREBP Transcription Factor Family AT4G23750 53.448 1.28e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops3g02249 AP2 3.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02249 - - pcin:129303306 151.754