Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02247 ATGGAAGATAGCATCTTGTGTAAATACACTGTTACCAAGAAGCTGGTCTCACCCAAGAAGACCCAAACCAATCACATGGAACCTAGGGTGATTCAGGAGACATCTTCAAGATTGCGTCCGGTTAAGGTTTCCACTACCGATAACAGTAGAAAGTTTCGTGGCGTCCGACAAAGACCATGGGGGAAGTGGGTGGCGGAGATTCGAGCAAAAAGGGTGAGACAATGGTTAGGTACCTATGACACTACAGAGGAAGCTGGAATGGCCTATGACAATGCTACCATTAAGCTTCGAGGTCCTGATTCCTTAACAAACATGCTCGCTCCACCGCAGAGGGAAAAACCATCATCATCATCAGAGACAGTTTCGGTGAAACCAGAAATGAAAATTGTATGA 393 0.458 MEDSILCKYTVTKKLVSPKKTQTNHMEPRVIQETSSRLRPVKVSTTDNSRKFRGVRQRPWGKWVAEIRAKRVRQWLGTYDTTEEAGMAYDNATIKLRGPDSLTNMLAPPQREKPSSSSETVSVKPEMKIV* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02247 130 SMART rav1_2 51 112 IPR001471 GO:0003700|GO:0006355
Rops3g02247 130 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Rops3g02247 130 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Rops3g02247 130 SUPERFAMILY DNA-binding domain 51 105 IPR016177 GO:0003677
Rops3g02247 130 MobiDBLite consensus disorder prediction 18 47 - -
Rops3g02247 130 CDD AP2 51 104 IPR001471 GO:0003700|GO:0006355
Rops3g02247 130 Gene3D AP2/ERF domain 50 106 IPR036955 GO:0003700|GO:0006355
Rops3g02247 130 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 37 116 - -
Rops3g02247 130 MobiDBLite consensus disorder prediction 18 43 - -
Rops3g02247 130 ProSiteProfiles AP2/ERF domain profile. 51 106 IPR001471 GO:0003700|GO:0006355
Rops3g02247 130 MobiDBLite consensus disorder prediction 108 123 - -
Rops3g02247 130 MobiDBLite consensus disorder prediction 100 130 - -
Rops3g02247 130 Pfam AP2 domain 51 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02247 Rops-Chr3 44746976 44747515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02247 44 109 AP2-EREBP Transcription Factor Family AT4G23750 69.118 3.60e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops3g02247 AP2 3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02247 - - pcin:129303306 137.502