Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02241 ATGGAAGAGAGTATCCTATGCAAATACAGCTTTACCAAGAAACTGGTTTCACCCAAGAAGACCCAAACCAATCACATGCAACCAAAGGTGGTTCGGATAATTGTTACAGATCCTGACGCCACTGATTCATCCAGCGATGAAGAAGGAGAGTGCTTCACACGCCATAGAACAAAGCGCTATGTCCACCAAATTGAAATCGAAACCAAGAAGAGTCCCACCACGGAGACATCTTCAAGATGGCAGCAAGAAAAGGTTTCCGCGACCAGCAACAACAGAAAGTTTCGTGGCGTCAGACAGAGATCATGGGGGAAATGGGTGGCGGAGATTAAAGATAAAAAGCAAAGACACTGGTTAGGTACTTTCGACACTGCAGAGGAAGCTGCTATGGCATACGACAATGCCGCCATTAAACTTCGAGGCCGTGATGCTTTGACAAACTTCCCCACTCCACCTCAGAAGGAAAATTCATGA 471 0.4628 MEESILCKYSFTKKLVSPKKTQTNHMQPKVVRIIVTDPDATDSSSDEEGECFTRHRTKRYVHQIEIETKKSPTTETSSRWQQEKVSATSNNRKFRGVRQRSWGKWVAEIKDKKQRHWLGTFDTAEEAAMAYDNAAIKLRGRDALTNFPTPPQKENS* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02241 156 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Rops3g02241 156 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Rops3g02241 156 FunFam Ethylene-responsive transcription factor 2 92 149 - -
Rops3g02241 156 Pfam AP2 domain 93 140 IPR001471 GO:0003700|GO:0006355
Rops3g02241 156 CDD AP2 93 148 IPR001471 GO:0003700|GO:0006355
Rops3g02241 156 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 150 - -
Rops3g02241 156 MobiDBLite consensus disorder prediction 67 92 - -
Rops3g02241 156 MobiDBLite consensus disorder prediction 70 92 - -
Rops3g02241 156 ProSiteProfiles AP2/ERF domain profile. 93 148 IPR001471 GO:0003700|GO:0006355
Rops3g02241 156 SUPERFAMILY DNA-binding domain 93 149 IPR016177 GO:0003677
Rops3g02241 156 SMART rav1_2 93 154 IPR001471 GO:0003700|GO:0006355
Rops3g02241 156 PIRSF PTI6 3 156 IPR017392 GO:0003700
Rops3g02241 156 Gene3D AP2/ERF domain 92 149 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02241 Rops-Chr3 44476020 44476490 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02241 11 154 AP2-EREBP Transcription Factor Family AT4G27950 50.314 9.24e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops3g02241 AP2 3.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02241 - - pcin:129303306 168.318