Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02238 ATGGAAGAGAGTATCCTATGCAAATACAGCTTTACCAAGAAACTAGTTTCACCAAAGAAGACCCAAACCAATCACATACAACCCAAGGTGGTTCGGATATTTGTTACGGATCCTGACGCCACCGATTCATCCAGCGATGAAGAAGGAGAGTGCTCCACACACCATAGAACAAAGCGTTATGTCCACCAAATTGAAATCGAAACCAAGAAGAGTCCCACCACGGAGACATCTTCAAGATGGGGGCAAGAAATGGTTTCCACGACCAGTAACAACAGAAAGTTTCGTGGCGTCCGACAGAGATCATGGGGGAAATGGGTGGCAGAGATTAAAGATAAAGGACAAAGACACTGGTTAGGTACGTTCGACACTGCAGAGGAAGCTGCTATGGCCTACGACAATGCCGCAATTAAGCTTCGAGGACGTGATGCTCTGACAAACTTCCCCACTCTATCGCAGAAGTAA 462 0.4654 MEESILCKYSFTKKLVSPKKTQTNHIQPKVVRIFVTDPDATDSSSDEEGECSTHHRTKRYVHQIEIETKKSPTTETSSRWGQEMVSTTSNNRKFRGVRQRSWGKWVAEIKDKGQRHWLGTFDTAEEAAMAYDNAAIKLRGRDALTNFPTLSQK* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02238 153 Gene3D AP2/ERF domain 92 150 IPR036955 GO:0003700|GO:0006355
Rops3g02238 153 CDD AP2 93 148 IPR001471 GO:0003700|GO:0006355
Rops3g02238 153 SUPERFAMILY DNA-binding domain 93 149 IPR016177 GO:0003677
Rops3g02238 153 SMART rav1_2 93 153 IPR001471 GO:0003700|GO:0006355
Rops3g02238 153 MobiDBLite consensus disorder prediction 38 92 - -
Rops3g02238 153 PIRSF PTI6 3 153 IPR017392 GO:0003700
Rops3g02238 153 FunFam Ethylene-responsive transcription factor 2 92 149 - -
Rops3g02238 153 MobiDBLite consensus disorder prediction 70 92 - -
Rops3g02238 153 Pfam AP2 domain 93 140 IPR001471 GO:0003700|GO:0006355
Rops3g02238 153 ProSiteProfiles AP2/ERF domain profile. 93 148 IPR001471 GO:0003700|GO:0006355
Rops3g02238 153 MobiDBLite consensus disorder prediction 47 69 - -
Rops3g02238 153 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 148 - -
Rops3g02238 153 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Rops3g02238 153 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02238 Rops-Chr3 44436407 44436868 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02238 11 147 AP2-EREBP Transcription Factor Family AT4G27950 49.007 1.70e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops3g02238 AP2 2.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02238 - - pcin:129303306 152.525