Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02236 ATGTCGAATGAACCAAGAAGAGCGATTAACCAAGAAGGGACAAGTCCCTCAAGAATATCAATTCGGGCTCTGAATGCTCGAGGTGAGGAGATGCAGTGGTTAATTATAGATGATGCTTATGTCTCTGATTCCTTGGATTCAGTTCGTGGCTTCACTTGGGAGAATAATGGTAGAGTTGTAGGAGTGAGTCCTGCAACTCAAGATTTTATTGAAAATCTTGAAAAGATTACAATTGATGGAACAAAGGAGTCTTCTTCAACCTCAAATTCTATGCTTGTATGTTCCATATGTCTTGAGGTGCTTTCAATTGGATCAAAAGCAATTCGCATGCCTAAACCTTGCTCTCATCTCTATCATGAAGATTGTATCATTAGGTGGCTCAACAGGTCTAACACATGCCCTTTGTGCCGTAGGAGTATCTAG 423 0.4066 MSNEPRRAINQEGTSPSRISIRALNARGEEMQWLIIDDAYVSDSLDSVRGFTWENNGRVVGVSPATQDFIENLEKITIDGTKESSSTSNSMLVCSICLEVLSIGSKAIRMPKPCSHLYHEDCIIRWLNRSNTCPLCRRSI* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02236 140 CDD RING-H2_PA-TM-RING 93 137 - -
Rops3g02236 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 140 IPR013083 -
Rops3g02236 140 SMART ring_2 94 136 IPR001841 -
Rops3g02236 140 SMART ringv_2 93 137 IPR011016 GO:0008270
Rops3g02236 140 PANTHER SI:CH211-59O9.10 64 140 - -
Rops3g02236 140 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Rops3g02236 140 Pfam Ring finger domain 94 137 IPR001841 -
Rops3g02236 140 SUPERFAMILY RING/U-box 93 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02236 Rops-Chr3 44360984 44361406 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02236 33 140 C3H Transcription Factor Family AT5G15820 33.333 4.40e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02236 - - lang:109353994 114.775