Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02234 ATGACTAAGCAAAATCGTTTCTGCTGGAAACGAAATCCTCGTCAGCCCTCTTCTTCTCTCCCCCAAGCAGCGAAATCTCCGTTTGGCTCTTCAAGGACCAACTCGGCGCCGTCTGTTGCTCATGGGAGCTTCATGGTTCACTTCAGGCGACTTTTCAGCGGTTGGGTTGCTTCGTGGTTCTTCTCCGGCGGCTGTTTCGTCTTCTTCTCTGGCGGGTCTTCTTCTCTGGCGGCTTCTCCTTCTTCTCCGGCTGTTTCTCCTTCTTCTCCGGCCAGATTTGAAATGGCTGATTCTGCCAATATTCAGAGCCAAAACACCCCCACTTCAACCTCTAGGAGTGGGATTTCACGTTTGGGTGGTGCAAGTACGAAGAATGGAGGCAAATCCTCTATTAAGGTCAGTATTGGTGCTGCATCCATTAAAACCCCATCCCAAGCCAAAACTCAGCATCATAATCGAAAGTCCAGCAGATATTGGACTGTTGATGTACAAGATGCTGCGAGAGTTATAAAAATTGCACAATTAAGATTGAAAGATCTATGGGCACTTCCTAATGGCACGCGGGTGTTGTTGCCACTTGATGAGTACAATCAACCAATAGGTGAAGCAGCTGGTCTTTTAGGACAAGCTTTGGGAGATTTAGGATTTGATTTTGCTGCCCTCCCTATATGTTATAATTCTTGGTCTGCAGTTCCTAATAACTATAAAGAGCAAGTGTACAATGGCACATTAAAGGAGAAATTCATTTTAGATGACGATTTAGTGAAGAAGACCATCCTTAAAAGGCTAGGGGGAAAATGGAAGGACAATAGAACACACATCTTTAATCGATGGTATAATCCAAAAATTAGCAAAGAAGAGAACATTGGGAATCCTCCCTTAGGTATTAGTCAAGATGAATGGACTCGTTTTATTGAGTATCGTTTGGATCCAAAGACTGTGAAAATGTGCGAACAAAATGCAAAGAATCGTGAGAAACAAGTAGTCGTACACACTGGTGGATCTAAGACCCTTGCAAGGAAACGAAAGGAGATGGAACTTGAGACGGGACAAAATGTGAGCAGGGGCATGGTGTTTGTTGCTACACACACTAAAATTGATGGTTCATATCAAAATGATGCTGCCAAAACAATATGTGAAAAAGTTCTTCATTTTGAGAGTCAAGGGAGTTGTCCACAAGTAATTGCACCAGATGACTCCCTTGGTCAAGTGCTTGGAAAGGAGCACTCGGGTTGGGTCAGAGGTATGGGTTTAGGGCCTTGTCCATCCGAAATTTTTGGACTTAGAAGGCAGAGGCACAATGGAGAAGGTTCAGGTTTTTTGGCCTCCAATAACCAAATGCAACAAGAAATATTAGAATTGCGAGCAAGTTTGGAAAGAGAAACACACAAAAGACGTGAACTTGAAAATGCTATCACCCTAGTTCTCCCAGAGTTTGCAGCTATTCTTAATCAAATGAAAAACAAAGAAAAGGAACAACCTCCTTCTGGGACTACCTATAGAATTGGTAATGGAAACGCAATAGGTCCTTCATGTAACTCACCCACACCTAGTATAGAGGGAACATTCGAGTCTCCATCTCTGGAGAAGCAAAATCCGATCAATTTGGATTCTGATATAGAGGGAACATGCAAGTCTCTATCACTACCACTAAAGGAGAAGCAAAATCTGATCAATTCAAATTCTGGTATTGAGGGATCATGTGATTCTCCATCACTAGAGAAGCAAAATTCGATCAATTTGGATTCTGTTATAGAGGGAATATGCGAGTGTCTATCTCTACCACCAAAGGAGAAGCAAATTCCGATCAATTCGAATTTTGGTATAGAGGGAACATGTGTGTCTCCATCGCTACGACCAAATGAGAAGCTAAATCTGATCAATTCGAATTCTGGTATAGAGGGAACATGCGAGTCTCCATCACTACCACTAAAGGAGAAGCAAAATCTGATCAATTCAAATTCTGGTATAGAGGGATCATGCGAGTCTCCATCACTACCACTAAAGGAGAAGCAAAATCTGATCAATTCAAATTCTGGTATAGAGGGATCATGCGAGTCTCCATCACTACCACCAAAAGAGAAACAAAATCCGATCAATTTGGGTTCTGGTATAGAGGGAACATGCGAGTCTCCATCACTACCACCAAAGGAGAAGCCAAATCCGATCAATTCGAATTCTGGTACAGGGGGAACATGCGAGTCTCCATCAATGAATTACCATGAATGTGAGATTTGTGATGATGGTGGTGAGTTGCTCTGCTGTGATTTCTGCCCTCGTACTTATCACCTTAAGTGCCTTGGTCGAAGGTATGTTCCTCGTGGAAAATGGAAATGCCCAAACTGCCAGTTTAACATTGATCTTTCAAAACCAAAAAACAAATCATCAAAGAAAGCAAAAGACATTTTCTTGCCAGATTCAAAGCGCAAATAG 2433 0.4242 MTKQNRFCWKRNPRQPSSSLPQAAKSPFGSSRTNSAPSVAHGSFMVHFRRLFSGWVASWFFSGGCFVFFSGGSSSLAASPSSPAVSPSSPARFEMADSANIQSQNTPTSTSRSGISRLGGASTKNGGKSSIKVSIGAASIKTPSQAKTQHHNRKSSRYWTVDVQDAARVIKIAQLRLKDLWALPNGTRVLLPLDEYNQPIGEAAGLLGQALGDLGFDFAALPICYNSWSAVPNNYKEQVYNGTLKEKFILDDDLVKKTILKRLGGKWKDNRTHIFNRWYNPKISKEENIGNPPLGISQDEWTRFIEYRLDPKTVKMCEQNAKNREKQVVVHTGGSKTLARKRKEMELETGQNVSRGMVFVATHTKIDGSYQNDAAKTICEKVLHFESQGSCPQVIAPDDSLGQVLGKEHSGWVRGMGLGPCPSEIFGLRRQRHNGEGSGFLASNNQMQQEILELRASLERETHKRRELENAITLVLPEFAAILNQMKNKEKEQPPSGTTYRIGNGNAIGPSCNSPTPSIEGTFESPSLEKQNPINLDSDIEGTCKSLSLPLKEKQNLINSNSGIEGSCDSPSLEKQNSINLDSVIEGICECLSLPPKEKQIPINSNFGIEGTCVSPSLRPNEKLNLINSNSGIEGTCESPSLPLKEKQNLINSNSGIEGSCESPSLPLKEKQNLINSNSGIEGSCESPSLPPKEKQNPINLGSGIEGTCESPSLPPKEKPNPINSNSGTGGTCESPSMNYHECEICDDGGELLCCDFCPRTYHLKCLGRRYVPRGKWKCPNCQFNIDLSKPKNKSSKKAKDIFLPDSKRK* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02234 810 ProSitePatterns Zinc finger PHD-type signature. 743 782 IPR019786 -
Rops3g02234 810 MobiDBLite consensus disorder prediction 682 731 - -
Rops3g02234 810 MobiDBLite consensus disorder prediction 514 534 - -
Rops3g02234 810 PANTHER OS10G0409366 PROTEIN-RELATED 137 437 - -
Rops3g02234 810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 732 807 IPR013083 -
Rops3g02234 810 SMART PHD_3 742 783 IPR001965 -
Rops3g02234 810 ProSiteProfiles Zinc finger PHD-type profile. 740 785 IPR019787 -
Rops3g02234 810 MobiDBLite consensus disorder prediction 1 32 - -
Rops3g02234 810 MobiDBLite consensus disorder prediction 98 129 - -
Rops3g02234 810 SUPERFAMILY FYVE/PHD zinc finger 738 788 IPR011011 -
Rops3g02234 810 Coils Coil 444 471 - -
Rops3g02234 810 MobiDBLite consensus disorder prediction 791 810 - -
Rops3g02234 810 CDD PHD2_CHD_II 743 782 - -
Rops3g02234 810 MobiDBLite consensus disorder prediction 682 707 - -
Rops3g02234 810 Pfam Plant transposase (Ptta/En/Spm family) 299 419 IPR004252 -
Rops3g02234 810 MobiDBLite consensus disorder prediction 790 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02234 Rops-Chr3 44337465 44346749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02234 743 782 PHD Transcription Factor Family AT1G05380 62.500 1.72e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02234 - - aip:107623372 391.349