Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02230 ATGTCAATGGAAACAAGAAGGGTCACTAGTCAAGAAGGGCCAAGTCCCTTGGGAATGCAAATTCGGGCTCTGAATCCTAGAGATGAGCAGATGCAATGGTCAATTATAGATGATGCTCATGTCTTTGATGCCTTGGACTTGGTTCACAGCTACACAATGGAGAACAACGGTAGAGGATTTATAGATGATACTCATGTCTTTGATGCCTTGGACTTGGTTCATGGTGACAGTATGGAGAACAATGATGGAGTTTCACAGGTGAGGCCTGCAACAAAAGATTCAATTGAAAATCTTGAGAAGATCACAATTGATGGAACAATAGAGCCTTCTTCTATGCTTGTGTGTTCCATATGTCTTGGGGTGCTTGCAATTGGATCAAAAGCAATTCGAATGCCCAAGCCTTGCTCTCATGTCTATCATGAAGATTGCATCATTAGGTGGCTCAACAAGTCTAACACATGCCCTTTGTGTCGTAGGAGTATCTAG 486 0.4259 MSMETRRVTSQEGPSPLGMQIRALNPRDEQMQWSIIDDAHVFDALDLVHSYTMENNGRGFIDDTHVFDALDLVHGDSMENNDGVSQVRPATKDSIENLEKITIDGTIEPSSMLVCSICLGVLAIGSKAIRMPKPCSHVYHEDCIIRWLNKSNTCPLCRRSI* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02230 161 Pfam Ring finger domain 115 158 IPR001841 -
Rops3g02230 161 MobiDBLite consensus disorder prediction 1 20 - -
Rops3g02230 161 PANTHER SI:CH211-59O9.10 63 161 - -
Rops3g02230 161 ProSiteProfiles Zinc finger RING-type profile. 115 158 IPR001841 -
Rops3g02230 161 SMART ring_2 115 157 IPR001841 -
Rops3g02230 161 SMART ringv_2 114 158 IPR011016 GO:0008270
Rops3g02230 161 MobiDBLite consensus disorder prediction 1 16 - -
Rops3g02230 161 SUPERFAMILY RING/U-box 114 161 - -
Rops3g02230 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 161 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02230 Rops-Chr3 44277238 44277723 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02230 46 161 C3H Transcription Factor Family AT5G15820 30.833 3.86e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02230 - - lang:109353994 119.012