Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02228 ATGTCAATGGAAACAAGAAGGGTCATTAGCCAACAAGAGTCACATCTCTCAGGAATGCGAATACAAATTTGGGTTCAGAATACTCAAGGTGAGATGCAGTGGACAACAGTAGATGGTGTTTATCTCTCACGAACCTTGGATGTGATTCATGTGGAGAACAATGGTAGAGTTTCAGGCATGAGGCCTACAACTCAAGATTCTATTGAAAATCTTGAAAAGATCACAATTGATGGGACACAAGAGTCATCTTCTATGCCTGTGTGTTCCATATGCCTTGAGATGCTTTCAATTGGGTCAAAAGCAATTCGCATGCCCAAACCTTGCTCTCATCTCTATAATCAAGATTGCATCATTAGGTGGCTTAACAGGTCTAACACATGCCCTTTGTGTCGTAGGAGTATCTAG 405 0.4148 MSMETRRVISQQESHLSGMRIQIWVQNTQGEMQWTTVDGVYLSRTLDVIHVENNGRVSGMRPTTQDSIENLEKITIDGTQESSSMPVCSICLEMLSIGSKAIRMPKPCSHLYNQDCIIRWLNRSNTCPLCRRSI* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02228 134 PANTHER SI:CH211-59O9.10 56 134 - -
Rops3g02228 134 SMART ring_2 88 130 IPR001841 -
Rops3g02228 134 Pfam Ring finger domain 87 131 IPR001841 -
Rops3g02228 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 134 IPR013083 -
Rops3g02228 134 SUPERFAMILY RING/U-box 87 134 - -
Rops3g02228 134 ProSiteProfiles Zinc finger RING-type profile. 88 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02228 Rops-Chr3 44193530 44193934 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02228 27 134 C3H Transcription Factor Family AT1G49850 33.636 3.26e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02228 - - lang:109353994 107.457