Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02227 ATGTCAATGGAAACAAGAAACGACATCCATGAAGAAGGGCCAAGTCGGTTAGGAATACCTATTTGGGCTCTGAATGCCCGAGGTGAGGAGCTACAGTGGTCAGTGATAGATGATGCTCATGTCTTTGATGCCTTGGACTTGGTTCACGTCTACAACGTGGAGAACAATGGTAGAAGAATTATAGATGATGGTTATGTCTTGGATTCCTTTGACTTGGTTCATGGTGACAGTATGAAGAACAATGGTGGAGTTTTAGGGGTGACACCTGCAACAAAACATTCTATTGAAAATCTTGAGAAGATCACAATTGATGGAACAAAAGAGTCTTCTTCCATGCCAATGTGTTCCATATGTCTTGGGGTGCTTTCAACTGGGTCAAAAGCAATTCGCATGCCTGAACCTTGCTCTCATGTCTATCATCAACATTGCATCGTTAAGTGGCTCAACAAATCCAACACATGCCCTTTGTGTCGTAGGAGTATCTAG 486 0.428 MSMETRNDIHEEGPSRLGIPIWALNARGEELQWSVIDDAHVFDALDLVHVYNVENNGRRIIDDGYVLDSFDLVHGDSMKNNGGVLGVTPATKHSIENLEKITIDGTKESSSMPMCSICLGVLSTGSKAIRMPEPCSHVYHQHCIVKWLNKSNTCPLCRRSI* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02227 161 Pfam Ring finger domain 114 158 IPR001841 -
Rops3g02227 161 ProSiteProfiles Zinc finger RING-type profile. 115 158 IPR001841 -
Rops3g02227 161 SMART ring_2 115 157 IPR001841 -
Rops3g02227 161 PANTHER SI:CH211-59O9.10 89 161 - -
Rops3g02227 161 SMART ringv_2 114 158 IPR011016 GO:0008270
Rops3g02227 161 SUPERFAMILY RING/U-box 114 161 - -
Rops3g02227 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 161 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02227 Rops-Chr3 44189276 44189761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02227 76 158 C3H Transcription Factor Family AT1G14200 38.554 3.29e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02227 - - lang:109353994 127.102