Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02226 ATGTCGATGGAAACAAGAAGGGTCATTGATCAAGAAGAGCCAAGTCTCTTAAGAATACTAATTCGGGCTCCGAATGTTAGAGGTGAGGAGCTGCGATGGTCAATCATAGATGATGTTCATGTCTTTGATGCCTTGGACTTGGTTCGCGGCTATAGTGTGGAGAACAATGGTAGAGGGATTATAGATGATGCTTATGTCTTTGATTCCTTTGACTTGGTCTTTGATTCTTTTGACTTGGTTGATGGTTATAGCCTGCAAAGCAATGATAGAAGGATTATAGATTATGGTTATGTCTTTGATTCTTTTGACTTTGTTCATGGCGATAGTGCAGAGAACAATGGTGAAGTTTTAGCGGTGACACCTACAACAAAAGATTCTATTGAAAATCTCGAAAAGATCACAATTGATGGAAAAGAGTTTTCTTCATCCACAGATTCTACACCCGTGTGTTCCATATGTCTTGAGGTGCTTGCAATTGGGTCAAAAGCAATTCGCATGCCTAAACCATGTTCTCATGTCTATCATCAAGATTGCATCCTTAGGTGGCTCAATAGGTCTAACACGTGCCCTTTGTGCCGAAGGAGTATCTAG 591 0.4061 MSMETRRVIDQEEPSLLRILIRAPNVRGEELRWSIIDDVHVFDALDLVRGYSVENNGRGIIDDAYVFDSFDLVFDSFDLVDGYSLQSNDRRIIDYGYVFDSFDFVHGDSAENNGEVLAVTPTTKDSIENLEKITIDGKEFSSSTDSTPVCSICLEVLAIGSKAIRMPKPCSHVYHQDCILRWLNRSNTCPLCRRSI* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02226 196 SUPERFAMILY RING/U-box 149 196 - -
Rops3g02226 196 SMART ringv_2 149 193 IPR011016 GO:0008270
Rops3g02226 196 PANTHER SI:CH211-59O9.10 121 196 - -
Rops3g02226 196 ProSiteProfiles Zinc finger RING-type profile. 150 193 IPR001841 -
Rops3g02226 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 196 IPR013083 -
Rops3g02226 196 Pfam Ring finger domain 149 193 IPR001841 -
Rops3g02226 196 SMART ring_2 150 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02226 Rops-Chr3 44183527 44184117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02226 135 196 C3H Transcription Factor Family AT4G12190 49.231 3.82e-13 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02226 - - lang:109353994 126.331