Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02223 ATGTCAATGGAAACAAGAAGGGTCATTGATCAAGAAGAGCCAAGCCCCTTAAGAATACTAATTTGGGCTCCGAATGTTAGAGGTGAGGAGCTGCAATGGTCAGTTATAGATGATGCTCATGTCTTTGATGCCTTGGACTTGGTTCGCACTTATAGCGTAGAGAACAATGGTAGAGGAATTATAGATGATGCTTATGTTTTTGATTCCTTTGACTTTATTCATGGTTATAGTGTGGCGAACAATGGTAGAGGAATTATGGATGATGCTTATGTCTTTGATTCCTTTGACTTGGTTCATGGTTACAATGTACAAAACAATGGTAGAGGAATTATAGATGATGCTTATATCTTTGATTCCTTTGACTTTGTTCATGGTGATAGTGCAGAGAACAATGGTGGAGTTTTAGGGGTGACATCTACAACAAAAGATTCTATTGAAAATCTCGAAAAGATCACAATTGATGGAAAAGAGTTTTCTTCATCTGCAGATTCTACACCCATGTGTTCCATATGTCTTGAAGTACTTGCAATTGGGTCAAAAGCAATTCGCATGCCTAAACCATGTTCTCATGTCTATCATCAAGATTGCATCATTAAGTGGCTCAGCAGGTCTAACACATGTCCTTTGTGTAGAAGGAGTATCTAG 645 0.3829 MSMETRRVIDQEEPSPLRILIWAPNVRGEELQWSVIDDAHVFDALDLVRTYSVENNGRGIIDDAYVFDSFDFIHGYSVANNGRGIMDDAYVFDSFDLVHGYNVQNNGRGIIDDAYIFDSFDFVHGDSAENNGGVLGVTSTTKDSIENLEKITIDGKEFSSSADSTPMCSICLEVLAIGSKAIRMPKPCSHVYHQDCIIKWLSRSNTCPLCRRSI* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02223 214 ProSiteProfiles Zinc finger RING-type profile. 168 211 IPR001841 -
Rops3g02223 214 Pfam Ring finger domain 167 211 IPR001841 -
Rops3g02223 214 CDD RING-H2_PA-TM-RING 168 211 - -
Rops3g02223 214 PANTHER SI:CH211-59O9.10 140 214 - -
Rops3g02223 214 SMART ring_2 168 210 IPR001841 -
Rops3g02223 214 SMART ringv_2 167 211 IPR011016 GO:0008270
Rops3g02223 214 SUPERFAMILY RING/U-box 167 214 - -
Rops3g02223 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 214 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02223 Rops-Chr3 44166652 44167296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02223 145 211 C3H Transcription Factor Family AT3G60080 45.070 8.56e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02223 - - lang:109353994 119.398