Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02222 ATGAAGAACAATGGTAGAGGAATTATAGATGATGCCTATGTCTTTAATTCCTTTAACTTGGTTTATGGTGACAGTGTGGAGAACAATGGTGGATTTTTAGAGGTGACGCCTGCAACAAAAAAATCTATTGAAAATCTTGAGAAGATTACAATTGATGGAACAGTAGAGTCTTCTTCTATGCCAGTGTGTTTTATATGTCTTAAGGTGCTTGCAATTGGGTCAAAAACAATTCGCATACCCAAGCCTTGCTTTCATCTCTATCATCAAGACTGCATCATCAAGTGGCTAAAAAGGTCTAACACATGTCCTTTGTGTCGTAGGAGTATCTAG 330 0.3758 MKNNGRGIIDDAYVFNSFNLVYGDSVENNGGFLEVTPATKKSIENLEKITIDGTVESSSMPVCFICLKVLAIGSKTIRIPKPCFHLYHQDCIIKWLKRSNTCPLCRRSI* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02222 109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 109 IPR013083 -
Rops3g02222 109 ProSiteProfiles Zinc finger RING-type profile. 63 106 IPR001841 -
Rops3g02222 109 SMART ring_2 63 105 IPR001841 -
Rops3g02222 109 SUPERFAMILY RING/U-box 62 109 - -
Rops3g02222 109 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 35 107 - -
Rops3g02222 109 Pfam Ring finger domain 62 106 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02222 Rops-Chr3 44163228 44163557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02222 11 109 C3H Transcription Factor Family AT5G15820 34.343 9.17e-15 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02222 - - lang:109353994 94.3597