Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02204 ATGCAACTCACACACGTTCTCTCTCTCTCTTCTGTTCTACTTTGGCTACTGTTCCTTAGCACGGCCAGGAGCTGGCTTATGGACATTGGAGGAATTGCAAAGAAAGTGGAAAATACTAATCTGTCAACAGCTGATCAAAGCAAGGACTGTGGAGCATATCATGAATGCCCAAAATGTCATTCTCATATTGATAACAGTGATGTTTCTCCTGATTGGCCTGGCTTTCCTACTGGTGTAAAGTTTGATCCTTCTGATGTTGAACTTTTAGAACAAATTAATTCATATGCTACTGCACAAAGAAAGCGTCGAAAGATTCACCATCAACATGGTTTGACCGAGGAGCATGTACGCTGGCACAAGACTGGTAAGACCAAAGCTATAATAGAAAATGGAGTCCATAAGGGATTTAAGAAGATCATGGTTCTTTATCAGCAGAAGCAGAATGAAAAAAACGAGGAGAATCCAATGGTTGAAGATTATAACATGGCATCACAAGCAAGTCCAAGAGCCCCAAAACCAAATCCCCCAAGTCGACCTTGTATTGGCAAATGTGTTGACTGTGATGGCAATTTTGATGAGAATGAACTTCCATCACTCATCCAGGATGCCAAGCCTACTCCTGGAGAGTCTCATGCCCCTCTATATGGTGCTGGTTGGGAGGCTCTATCAATGAAAGAGTTGGGCACACAATATGTTTTCATGTATTATGGTTGTGTTGTATTTGCTGTTAGACGCCGCAGTCCATATTTTATGGTAGAAGTCGTGGGAAGTACTTCTAAGGGCTACACAGAAGAAGAATATTTGGTAACAGGAGGGATCACAAGAAGTGGGAGATATTATGACGCAGAAAATGCGGAGAAGAAGAAAAATAACAAAGGGAAAGATGATGAGAAAGCCCTGGATGAAGAGGAGGTGGGCGAGAAGAAAGGAGAGAATGAGGAAGAGGAGTTCCTAAAAATAATGAAGCAGAAATATGAAGCATGTGCCAATGGTTTACAAGTTGCAATTGATCTGGGAGTGAGGCAGCTAAGTGTGTTCGGAGATTCGACACTCATCATCTACCAAGTGAATGGTGAATGGCAAACCAAGGATGCGAAATTGGTACCTTATCAAAAGTATTTGACTCAACTGATCGCAAAGTTTGAAGAAGTGACCTTCTCTCATATGAGTCGAGAAAAGAATCAATTCGCAGATGCACTAGCCACACTGGCTGCGATGTCCAAGTTAGATATGTGTACCGAAGTACAGCCCATCCAAATAGGAACACAAGATGCGCCGACATATTGTGCCAATGTGGAAGATGAATCGGAAGATGAGCCGGAGAATGAGCCTTGGTACCATGACATCAAACGTTACATCCAGCATAGAGAATACCCAACTGGGGGAAGTAAAGCGGACAAAAAGACTATTCGCCGATTGTCGATGGAATTTTTCTTGAATGGGGAAACTCTTTATAAACGAAGTCATGATGGTACACTAATGAGGTGTGTGGATGCTCAAGAGGCTCGTTTAATCATGACAGAGGTACATGAAGGGATCTGTGGGACCCACGCTAATGGGCATATGATGGCCCGAAAGATCATGAGGAGTGGGTACTATTGGTCTACCATGGAGGCTGATTCTATGGGGTATGCGCGAAAATGTCAGAAATGTCAGAAATATGCTGATCAGATCAAGGCACCTCCATTCCCGTTGCACAATTTAATCTCTCCTTGGCCGTTCTCGATGTGGGGAATAGATGTCATTGGGCCAATTAATCCAAAGGCCTCAAATGGGCACCATTTTATTTTGGTGGCAATTGATTACTTCACCAAGTGGATCGAAGCATCTTCGTACGCTAGTATTTCCCAGAAAGTGTTTGCTAGGTTTCTCAAAAGGGACATTATCTGCCGATATGGAATTCCAGAAAGAATAATCACAGATAATGCACCTAACCTTAATGGCTCAGAGATAGAAAAGTTGCGTGAGCATTTCAAGGTCAAGCATCACAACTCAGCTCCTTACAGGCCTCAGATAAATGGGGCAGTTGAGGCAGCAAATAAGAATATTAAGAAGATTGTTGCAAAGATGACAGAAAATTACAAGGATTGGCATGAAAAGTTGCCCTATGCTTTGCATGCGTATCGTACAAATATACGCTCAAGTACTGGGACAACACCATTCTCCTTGGTTGACCCTCTCTGGGATAGCAACCAAACCTCCTTTCTTCTCCTTTCAATACTCTTTTCCTCTCCAAAACTCACCAAGCTTTTTCCCCAAAAAAAGGTCCCTTCATCTGTTGAAGCCTCTCCCTTTTATCACCAGGCTCTCTTTGGTTTCCTCGTTAAGTTCCCCGAGGAAAGAACAACCAACAAGCGTGGCGTACTCTTCCTCAAACTTGACGTAGACCTCTTATTTACCGAGAAGCCCATCTTCTACTGCCAAGGCCACTTCATCGTGGGAACAAAAAATGATGGGTCTTGA 2463 0.4312 MQLTHVLSLSSVLLWLLFLSTARSWLMDIGGIAKKVENTNLSTADQSKDCGAYHECPKCHSHIDNSDVSPDWPGFPTGVKFDPSDVELLEQINSYATAQRKRRKIHHQHGLTEEHVRWHKTGKTKAIIENGVHKGFKKIMVLYQQKQNEKNEENPMVEDYNMASQASPRAPKPNPPSRPCIGKCVDCDGNFDENELPSLIQDAKPTPGESHAPLYGAGWEALSMKELGTQYVFMYYGCVVFAVRRRSPYFMVEVVGSTSKGYTEEEYLVTGGITRSGRYYDAENAEKKKNNKGKDDEKALDEEEVGEKKGENEEEEFLKIMKQKYEACANGLQVAIDLGVRQLSVFGDSTLIIYQVNGEWQTKDAKLVPYQKYLTQLIAKFEEVTFSHMSREKNQFADALATLAAMSKLDMCTEVQPIQIGTQDAPTYCANVEDESEDEPENEPWYHDIKRYIQHREYPTGGSKADKKTIRRLSMEFFLNGETLYKRSHDGTLMRCVDAQEARLIMTEVHEGICGTHANGHMMARKIMRSGYYWSTMEADSMGYARKCQKCQKYADQIKAPPFPLHNLISPWPFSMWGIDVIGPINPKASNGHHFILVAIDYFTKWIEASSYASISQKVFARFLKRDIICRYGIPERIITDNAPNLNGSEIEKLREHFKVKHHNSAPYRPQINGAVEAANKNIKKIVAKMTENYKDWHEKLPYALHAYRTNIRSSTGTTPFSLVDPLWDSNQTSFLLLSILFSSPKLTKLFPQKKVPSSVEASPFYHQALFGFLVKFPEERTTNKRGVLFLKLDVDLLFTEKPIFYCQGHFIVGTKNDGS* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02204 820 Gene3D - 289 416 IPR036397 GO:0003676
Rops3g02204 820 Pfam Reverse transcriptase-like 325 403 IPR002156 GO:0003676|GO:0004523
Rops3g02204 820 Gene3D - 463 554 - -
Rops3g02204 820 SUPERFAMILY NAC domain 60 164 IPR036093 GO:0003677|GO:0006355
Rops3g02204 820 SUPERFAMILY Ribonuclease H-like 568 722 IPR012337 -
Rops3g02204 820 Gene3D NAC domain 82 183 IPR036093 GO:0003677|GO:0006355
Rops3g02204 820 CDD RNase_HI_like 325 405 - -
Rops3g02204 820 ProSiteProfiles Integrase catalytic domain profile. 569 728 IPR001584 GO:0015074
Rops3g02204 820 MobiDBLite consensus disorder prediction 287 312 - -
Rops3g02204 820 PANTHER ENDONUCLEASE-RELATED 380 724 - -
Rops3g02204 820 Pfam Integrase core domain 573 670 IPR001584 GO:0015074
Rops3g02204 820 Pfam Integrase zinc binding domain 497 555 IPR041588 -
Rops3g02204 820 SUPERFAMILY Ribonuclease H-like 324 407 IPR012337 -
Rops3g02204 820 Gene3D - 566 733 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02204 Rops-Chr3 43495216 43518931 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02204 56 164 NAC Transcription Factor Family AT4G28500 27.711 6.31e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02204 - - lang:109342423 634.795