Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02201 ATGACCCTCTTCTGGCATGGGAAACTGGTTGTGTTCATATACTTGTGGTTGTGGTGGAGTACTAGTATTCATGTTAAAGCAGCAAATGACAGTTTGAGGCCAGGTGATACCCTGGATTCCACATCCAAGCTATGTTCTAAAAATGGAATATATTGTATGGAATTTGGCCGAAAAGATGGATATGAGGACGATTACTTGATTATGCGACATACAGGTGATGGGCATCTAGTGTGGTGGAGTGATGGCAATCAACCAGTTGACCGTGATTCTGCAGTTCTATCGCTGAACCACTCTGGTGTTCTGAAAATAGAATCTGTACGTCAGAAAACACCAATAATCCTTTACTCTCCACCTGATGCCAGTGTCATCAACAACAATACGGTGGCCACCTTGTTGGACTCTGGCAATTTTATGCTTCAACAACTTCACCCCAATGGAACAAAGAGTGTTGTGTTGTGGCAGAGTTTTGATTATCCCACAGACACTTTAATCCCTACGATGAAGTTAGGTGTCAACCACAAAACAGGACATAATTGCTCACTGGTTTCGATCTTGACTCATTCACTCTTATTTCCTGGTGCCTTTAGCCTCGAATGGGAACCAAAAACACGAGAATTGATCATCAAGCGACGTGGAAAAGTGTGCTGGAGAAGTGGGAAACTTATAAACAATAGATTCGAGCACATTCCAGAGGAAATCCAGCGTATGCATCAGTACACCATTGTCTCTAACAGGGATGAGGACTCCTTCAGTTTCAATATCAAAACTCCGAATAAAGAACAATCTTCAATATGGTGGGTAACAGCATCAGGGAAGTTAACAAGTGATAACGGAGATATTGCAAGAGCTGATATGTGTTATGGATATAATAATACTGAAGGGGGATGCCAAAGATGGGAGGATATACCTACATGTAGGGAACCCGGTGATGTGTTTCAGAATATGAAAGGTAACCCCAACTGTGACAATGTAAACTTTGAACCGAATACAGGTTATCGCAACAGTGATTGCGAGACCATTTGCTGGACCACCTGCAATTGCACCGGATACAAATTGTTACATGCTAACGAAACTGGATGTACATTCTTTCAATGTCCACGGGAAGATTATAGTTTAGACCTTGATGCAGAAAACTATTACATGCTGGTAAACAGAGTCCCACATAAGCTTAAGTCTACTATGCTGGTAAACAGAGTCCCACATAAGCGCACAAAAAGAAGGTGGATATGGATAAGTGCAGTAATAGCAGCTGCTCTACTCGTAATATGCGCATTTATTTTATGCCTTGCCTTACATAAACGAAAATATTGGCTTAAAGGGAAGAAAAGTAAAAGCATGGAGAGGGAGCTGCAAGATTTTGAAGATGATTTAAAGAAGGGTCATGATATCAAAGTATTTAACTATACATCAGTTTTGACGGCGACAAATGCCTTTTCACCTGAAAACAAGCTAGGACAGGGAGGCTTTGGACCTGTTTACAAGGGAGTCCTGCCAACAGGGCAAGAAGTTGCTGTAAAAAGACTTTCAAAAACTTCTGGACAAGGAATTGTGGAATTTAAAAATGAACTAACACTCATATGTGAACTTCAGCACACGAATCTTGTACAACTACTTGGTTGTTGCATTCATAAAGAAGAGAGGATTCTCATTTATGAATATATGCAAAACAAAGGATTGGATTTCTATCTATTCGATTGTACAAGAAGCAAGTTCCTAGATTGGAAGAAGCGCTTCAACATAATAGAAGGAATTTCTCAAGGATTACTCTATCTTCATAAGTACTCAAGACTCAAAGTTATTCATAGAGACTTGAAGGCTAGCAACATACTTCTTGATGAGAATATGAACCCAAAAATTTCAGATTTTGGTATGGCAAGAATATTTACACTTGAATCCACGATAAATACCAACAGGATTGTTGGGACATATGGTTACATGTCTCCAGAGTATGCCATGGAAGGAATCTGTTCCACAAAGTCTGATGTCTATAGCTTTGGAGTGTTGCTGCTTGAAATTATTAGTGGAAGAAGAAACAATAGCTTCTATGATGCTGATGGCCCACTAAACCTAATAGGACATGTATGGGAGCTATGGAATGAGGGTGTGTGGTTACAGTTAATAGATCCATCATTAAATGAGAGAGTTGTTCCTGATGAAGTGCAAAGATGCATTCATGTTGGTCTCTTATGCGTGCAACAAGATGCAAATGATCGACCTACAATATCTGAGGTTATTTCAATGTTAACCAACAAAATTACAATTGAAAATTTGCCAAGAAGACCAGCATTCTATGTTGGAAGACAGATCCTTGAGGGGACATCATCTTCTAAACCCGAGCAGCACCAGTTTTTGCTTGTTCTTCTACCGGACTGGGCTGAGCTTGTGGGTGCTGCTCACGTGATGTGGCCGATGGGGTGGCTGACAACGTATGTGAGCTAG 2439 0.4047 MTLFWHGKLVVFIYLWLWWSTSIHVKAANDSLRPGDTLDSTSKLCSKNGIYCMEFGRKDGYEDDYLIMRHTGDGHLVWWSDGNQPVDRDSAVLSLNHSGVLKIESVRQKTPIILYSPPDASVINNNTVATLLDSGNFMLQQLHPNGTKSVVLWQSFDYPTDTLIPTMKLGVNHKTGHNCSLVSILTHSLLFPGAFSLEWEPKTRELIIKRRGKVCWRSGKLINNRFEHIPEEIQRMHQYTIVSNRDEDSFSFNIKTPNKEQSSIWWVTASGKLTSDNGDIARADMCYGYNNTEGGCQRWEDIPTCREPGDVFQNMKGNPNCDNVNFEPNTGYRNSDCETICWTTCNCTGYKLLHANETGCTFFQCPREDYSLDLDAENYYMLVNRVPHKLKSTMLVNRVPHKRTKRRWIWISAVIAAALLVICAFILCLALHKRKYWLKGKKSKSMERELQDFEDDLKKGHDIKVFNYTSVLTATNAFSPENKLGQGGFGPVYKGVLPTGQEVAVKRLSKTSGQGIVEFKNELTLICELQHTNLVQLLGCCIHKEERILIYEYMQNKGLDFYLFDCTRSKFLDWKKRFNIIEGISQGLLYLHKYSRLKVIHRDLKASNILLDENMNPKISDFGMARIFTLESTINTNRIVGTYGYMSPEYAMEGICSTKSDVYSFGVLLLEIISGRRNNSFYDADGPLNLIGHVWELWNEGVWLQLIDPSLNERVVPDEVQRCIHVGLLCVQQDANDRPTISEVISMLTNKITIENLPRRPAFYVGRQILEGTSSSKPEQHQFLLVLLPDWAELVGAAHVMWPMGWLTTYVS* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02201 812 SMART blect_4 29 159 IPR001480 -
Rops3g02201 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 443 553 - -
Rops3g02201 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 599 611 IPR008271 GO:0004672|GO:0006468
Rops3g02201 812 Gene3D Transferase(Phosphotransferase) domain 1 554 758 - -
Rops3g02201 812 SMART serkin_6 478 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02201 812 ProSiteProfiles Protein kinase domain profile. 478 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02201 812 Pfam D-mannose binding lectin 76 183 IPR001480 -
Rops3g02201 812 PIRSF SRK 2 284 IPR024171 GO:0004674
Rops3g02201 812 PIRSF SRK 277 787 IPR024171 GO:0004674
Rops3g02201 812 Pfam Protein tyrosine and serine/threonine kinase 481 748 IPR001245 GO:0004672|GO:0006468
Rops3g02201 812 CDD STKc_IRAK 484 750 - -
Rops3g02201 812 Gene3D Phosphorylase Kinase; domain 1 438 553 - -
Rops3g02201 812 ProSiteProfiles Bulb-type lectin domain profile. 29 152 IPR001480 -
Rops3g02201 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 554 756 - -
Rops3g02201 812 Gene3D - 23 156 IPR036426 -
Rops3g02201 812 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 138 774 - -
Rops3g02201 812 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 179 IPR036426 -
Rops3g02201 812 SUPERFAMILY Protein kinase-like (PK-like) 463 769 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02201 Rops-Chr3 43397306 43402739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02201 417 780 Receptor kinase-like Gene Family AT3G45860 52.304 2.04e-122 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g02201 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02201 - - vun:114168194 971.074