Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02194 ATGAATCACTCACTGAGATTTCTTGAAATCTTACATTCATTTGTGTGTTACCAGGAAGTCATGAACGATCATCCAGATAATCATGTTTGGGAAGCACCCTATGGCTTTTATTATCCTCCTTTTACGGCAGTTTCGTCGTCCCCATCTGCAAGAGAAGAGAAGAGAGCACAGCCGCATTCTGCTTCCAATTCTCAAGAGGGAACCATAGTAACAATGGCTTACGCTGCAATGAAACCCACTAAGCCAGGCTTGGAGGAGTCACAAGAGCAGATCCACAAGATCAGGATCACCCTTTCCTCCAAGAATGTCAAGAATCTCGAGAAAGTTTGCACCGACCTGGTTCGTGGTGCCAAGGACAAGCGTCTCAGGGTCAAGGGACCTGTCAGGATGCCAACTAAAGTTCTTAACATCACCACCAGGAAATCCCCCTGTGGAGAAGAGCACCTTCTGTATCATCAGTTCTCAAAGGCAAAACTGCCATCTTCATTCAAAGAAGTGATTTTTAAAAGTTCAAACTTTGAATCCTTAAATTGGGGCCAAGAGCTAGTGTTGGTGCCAGTAAACTTCAAGTATAAGATCTCCATTGATCTTGGAACTAAACTCACACTATGCAGTCACCAAGCAATTTTTTATTTCCAGTTCCTCTTGGGGTTTGTGGTGGAGCTGTGGACAATGGGTGATGATTTCAAGTACCGATATGCAGAGTCTTGGTTCAAACAAGTGGCGAAAGCACCAACCAACCTTATGCTTCACAACACAGCAAAGCTAGAATCATCCCAACTCCTACTTCGGCAGACACCGTCAGCTGTCCAGTTTGTTTGTCCCTCGCATGTTCCAAGGAGGTGCATAAATTTAATCCAAACCCAACAACGCTGCTTTCGTCAAGGTACCAGGCTGCACAACACTCAAGATGATCCTCCAAACCAGCCCACTGGAGGTGATCCTACAGACCACCCTACCAAGATGATCCCGTAG 975 0.4554 MNHSLRFLEILHSFVCYQEVMNDHPDNHVWEAPYGFYYPPFTAVSSSPSAREEKRAQPHSASNSQEGTIVTMAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEEHLLYHQFSKAKLPSSFKEVIFKSSNFESLNWGQELVLVPVNFKYKISIDLGTKLTLCSHQAIFYFQFLLGFVVELWTMGDDFKYRYAESWFKQVAKAPTNLMLHNTAKLESSQLLLRQTPSAVQFVCPSHVPRRCINLIQTQQRCFRQGTRLHNTQDDPPNQPTGGDPTDHPTKMIP* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02194 324 PRINTS Ribosomal protein S10 family signature 93 106 IPR001848 GO:0003735|GO:0005840|GO:0006412
Rops3g02194 324 PRINTS Ribosomal protein S10 family signature 128 143 IPR001848 GO:0003735|GO:0005840|GO:0006412
Rops3g02194 324 Hamap 30S ribosomal protein S10 [rpsJ]. 91 199 IPR001848 GO:0003735|GO:0005840|GO:0006412
Rops3g02194 324 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 49 155 IPR001848 GO:0003735|GO:0005840|GO:0006412
Rops3g02194 324 ProSitePatterns Ribosomal protein S10 signature. 117 132 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops3g02194 324 Gene3D Ribosomal protein S10 domain 74 157 IPR036838 -
Rops3g02194 324 SUPERFAMILY Ribosomal protein S10 93 147 IPR036838 -
Rops3g02194 324 SMART Ribosomal_S10_2 95 192 IPR027486 -
Rops3g02194 324 Pfam Ribosomal protein S10p/S20e 95 147 IPR027486 -
Rops3g02194 324 MobiDBLite consensus disorder prediction 48 67 - -
Rops3g02194 324 MobiDBLite consensus disorder prediction 298 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02194 Rops-Chr3 43010784 43025192 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02194 72 154 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 81.928 3.30e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02194 K02969 - cit:102621376 149.058