LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g02192	ATGACTCTCTTCCGGCATGAGAAACTGGCTGTGCTCATATACTTGTGGCTGTGGTGGAGTACTAGTATTCATGTTAAAGCAGCAAATGAGAGTTTGAGGCCAGGTGATACCCTGAATTCCACATCCACCCTATATTCTAAAAATGGAAAATATTACATGCTTTTTGACCTAGCAGAAGAGGACTACTATTACTTGTTTATAAGAGGTACAAATGGGTATGATGTGTGGTTTAGTGATAGAAATCAACCAGTTGACTTTGATTCTGCAGTTCTATCGCTAAACCACTCTGGTGTTCTGGAAATAGAATCTAAACTTGGGAAACCAATCATCCTTTACTCTCCACCTAATTTCAGTGCCACCAACAACAACACTGTGGCCACCTTGTTGGACTCTGGCAATTTTGTGCTTCAACAACTTCACCCCAATGGGACAAAGAGAATTGTGTTGTGGCAGAGTTTTGATTATCCCACAGACATGTTAATCCCTACGATGAAGTTAGGTGTCAACCACAAAACAGGACATAATTGGTCACTGGTTTCGTCCTTGACTGATTTACTCTATTTTCCTGGTGCCTTTAGCCTCGAATGGGAACCAAAATTGCGAGAATTGATCATCAAGCGACGTGGGAAGGTGTGCTGGAGAAGTGGGAAACTGAGAAACAATAGATTCGAGCACATTCCAGAGGAAATCCAGCGTATGTATGAGTACACCATTGTCTCTAACAGGGATGAAGACTCCTTCAGTTTCAAGATCAAAACTCCCAATAAAGCATACTTTTCAAGATGGAAATTATTAGAAACAGGGCGGTTAATAAGTGATGAAGGTGACATTGCAAGAGCTGATATGTGTTATGGATATAATAATACTGAAGGGGGATGCCAAAGATGGGAGGATATACCTACATGTAGGGAACCTGGTGATGTGTTTCAGAAAAGGATGGGTCGTGTCAGTTGTGACGATACAATCATTGACCTAACTCCAGGCTATGTCGACACTGATTGCAAGGCCATGTGCTGGAGCAACTGTAGCTGCACCGGATACACGAACTATTATCCTAATGGGACTGGATGCGTTCTCTATGGCTGTCCAGTAGAAGATAATATTTTTGACGATAGTGGAGATGAACTTTACATGCTGGTAAGGATAGACCCACATAAAGGTACAAAAAGAAGGTGGATATGGATAAGTGCAGTAATAGCAGCTGCTCTACTCGTAATATGCGCATTTATTTTATGCCTAGCCTTACAGAAACGAAAATATTGGCTTAAAGGGAAGAAAAGTAAAAGCATGGAGACGGAGCTGCAAGATTTGGATGCTTCCAATGGATCTTCTGGGATCAAAGATTTTGAAGATGATTTAAAAAAGGGCCATGATATCGAAGTATTTAACTATGCATCAGTTTTGACAGCGACTAGTGACTTTTCACCTGAAAACAAGCTAGGACAGGGAGGCTTTGGACCTGTTTATAAGGGAGTCCTGCCAACAGGGCAAGAAGTTGCTGTGAAAAGACTCTCAAAAAATTCTGGGCAAGGAATTGTGGAATTTAAAAATGAGTTAACACTCATATGTGAACTTCAGCACATGAATCTTGTACAACTACTTGGTTGTTGCATTCATAAAGAAGAGAGGATTCTAATTTACGAATATATGCCAAACAAAAGCTTGGATTTCTATCTATTCGATTGTACCAGAAGCAAGTTCCTGGATTGGAAGAAGCGCTTCAACATAATAGAAGGAATTTCTCAAGGATTACTCTATCTTCATAAGTATTCAAGACTCAAAGTCATTCATAGAGACTTGAAGGCTAGCAACATACTTCTTGATGAGAACATGAACCCAAAAATTTCAGATTTTGGTATGGCAAGAATATTTACACCTGAAACCACAATAAATACCAACAGGATTGTTGGGACATATGGTTACATGTCTCCAGAGTATGCCATGGAAGGAATTTGCTCCACAAAGTCTGATGTATATAGCTTTGGAGTGTTGATGCTTGAAATTGTTAGTGGAAGAAGAAACAATAGCTTTTACGATGCTGACCGCCCACTAAACTTAGTAGGACGTGCGTGGGAGCTATGGAATGAGGGTGTGTGGCAACAATTAATGGATCAGTCGTTGAATGACACATTTGTTCCTGATGAAGTGCAAAGATGCATTCATGTTGGTCTCTTATGCGTGCAACAAGATGCAAATGATCGACCTACAATGTCTGAGGTTATTTCAACGTTAACCAACAAAATTACAATTGATACCTTGCCAAGAAGACCAGCATTCTATGTTGGAAGAGAGATCCTTGAGGGGACATCATCTTCTAAATGA	2322	0.4027	MTLFRHEKLAVLIYLWLWWSTSIHVKAANESLRPGDTLNSTSTLYSKNGKYYMLFDLAEEDYYYLFIRGTNGYDVWFSDRNQPVDFDSAVLSLNHSGVLEIESKLGKPIILYSPPNFSATNNNTVATLLDSGNFVLQQLHPNGTKRIVLWQSFDYPTDMLIPTMKLGVNHKTGHNWSLVSSLTDLLYFPGAFSLEWEPKLRELIIKRRGKVCWRSGKLRNNRFEHIPEEIQRMYEYTIVSNRDEDSFSFKIKTPNKAYFSRWKLLETGRLISDEGDIARADMCYGYNNTEGGCQRWEDIPTCREPGDVFQKRMGRVSCDDTIIDLTPGYVDTDCKAMCWSNCSCTGYTNYYPNGTGCVLYGCPVEDNIFDDSGDELYMLVRIDPHKGTKRRWIWISAVIAAALLVICAFILCLALQKRKYWLKGKKSKSMETELQDLDASNGSSGIKDFEDDLKKGHDIEVFNYASVLTATSDFSPENKLGQGGFGPVYKGVLPTGQEVAVKRLSKNSGQGIVEFKNELTLICELQHMNLVQLLGCCIHKEERILIYEYMPNKSLDFYLFDCTRSKFLDWKKRFNIIEGISQGLLYLHKYSRLKVIHRDLKASNILLDENMNPKISDFGMARIFTPETTINTNRIVGTYGYMSPEYAMEGICSTKSDVYSFGVLMLEIVSGRRNNSFYDADRPLNLVGRAWELWNEGVWQQLMDQSLNDTFVPDEVQRCIHVGLLCVQQDANDRPTMSEVISTLTNKITIDTLPRRPAFYVGREILEGTSSSK*	774

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g02192	773	SMART	blect_4	35	156	IPR001480	-
	Rops3g02192	773	PIRSF	SRK	274	773	IPR024171	GO:0004674
	Rops3g02192	773	PIRSF	SRK	1	283	IPR024171	GO:0004674
	Rops3g02192	773	Gene3D	Transferase(Phosphotransferase) domain 1	550	752	-	-
	Rops3g02192	773	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	131	760	-	-
	Rops3g02192	773	Gene3D	-	23	153	IPR036426	-
	Rops3g02192	773	ProSiteProfiles	Protein kinase domain profile.	474	759	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops3g02192	773	Pfam	Protein tyrosine and serine/threonine kinase	477	744	IPR001245	GO:0004672\|GO:0006468
	Rops3g02192	773	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	439	549	-	-
	Rops3g02192	773	Pfam	PAN-like domain	304	359	IPR003609	-
	Rops3g02192	773	Gene3D	Phosphorylase Kinase; domain 1	441	549	-	-
	Rops3g02192	773	SUPERFAMILY	Protein kinase-like (PK-like)	460	758	IPR011009	-
	Rops3g02192	773	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	550	752	-	-
	Rops3g02192	773	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	595	607	IPR008271	GO:0004672\|GO:0006468
	Rops3g02192	773	CDD	STKc_IRAK	480	746	-	-
	Rops3g02192	773	SMART	serkin_6	474	749	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops3g02192	773	ProSiteProfiles	Bulb-type lectin domain profile.	29	149	IPR001480	-
	Rops3g02192	773	Pfam	D-mannose binding lectin	75	180	IPR001480	-
	Rops3g02192	773	SUPERFAMILY	alpha-D-mannose-specific plant lectins	74	184	IPR036426	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g02192	Rops-Chr3	42936001	42940869	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g02192	451	760	Receptor kinase-like Gene Family	AT3G45860	55.591	1.46e-116	365

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Rops3g02192		PK_Tyr_Ser-Thr	3.1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g02192	-		-	vun:114168194	989.949