LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g02179	ATGGTTTGCTGTAAACTAGCGAAACTGGTTGTGTTTATCTACTTGTGGTTGTGGTGTACTAGTATTCATGTTAAAGCAGTAAGTGACAGTTTGAAGCCAGGTGATACACTGAATTCCACATCTACGCTACGTTCTAAAAATGGAAAATATTATATGTATTTTGGCAGAACATATGGTGATGAGGACAGTTACTGGACTATAGGTACTGTTGCAGGTGAGGAAATATTGTGGTTGAGTGATAGAAATCAACCCATTGACCAGAATTCTTCATTGCTAACGTTAAACTACTCTGGTGTGCTGAAAATAGAATCTCAACATGGGAAACCAATAATCCTTTACTCTCCACCTAATGTCAGTGTCATCAACAACAACATTGTGGCCACCTTGTTGGACTCTGGCAATTTTGTGCTTCAACAACTTCACCCCAATGGGACAAAGAGTGTTGTGTTGTGGCAGAGTTTTGATTATCCCGTAGACACTTTGGTGGTTACGATGAAGTTAGGTGTCAACCACAAAACAGGACATAATTGGTCACTGGTTTCATGCTTGACTAATTCACTCTCAACTCCTGGTGCTTTTAGCCTTGAATGGGAACCAAAAACACGCGAATTGATCATCAAACGACGAGGAAAAGTGTGCTGGACAAGTGGGAAACTTATAAACAATAGATTCGAGCACATTCCAAAGAAAATCCAGCATATGAATCAGTACATCATTGTTTCTAACAGTGATGAAGACTCCTTCAGTTTCAATATCACAACTCAGAATAAAAAAAAGTTTCCAGGATGGTCTCTAAAAGAAACAGGGCAGTTAACCAGTACTCTAGGAGACATTGCAAGGGCTGATATGTGTTATGGATATAATAAGACTGAAGGGGGATGTCAAAAATGGGAAGATATACCCACTTGTAGGGAACCTGGTCATGTGTTTCAGAAAAAGACAGGTAGCCCCAATTATGAAAATGCAACCATTGAACCGAATACAGGTTATGGAAACAGTGATTGCATGGCCATTTGCTGGAGCAACTGTGACTGCACTGGATTCAGAAAGTATTATCGTAATGGAACTGGATGTACATTCTTTCAATGTCCACCGGAAGATTATTCTTTTAACAATAATGGAGAAAACTTTTACATGTTGATAAAGATAACCCCTCATAATGGTACGAAAAAGTGGATATGGAGAAGTGCAGTAATTGCAGCTGCACTACTCATAATATGCGCATTCATTTTATGCCTAGCTTTAAAGAAACGAAAATATAGGCTTAAAGAGAAGATTAAAAAAACGGAGACGGAGATGCTAGATTTGGCAGCTTCCAATGGATCCTCTAGTATCAAAGATCTTGAAGATGATTTAAAGAAGGGACATGACATGAAAGTATTTAACTATACATCAGTTTTGATGGCAACGAGTGACTTTTCACCTGAAAACAAGCTAGGACAGGGAGGCTTTGGACCTGTTTATAAGGGAATCCTGCTGACAGGTGAAGAAGTTGCTGTAAAAAGACTCTCAAAAAATTCTGGGCAAGGAGTTGTGGAATTCAAAAATGAACTAACACTTATATGTGAACTTCAGCACACAAATCTTGTACAACTACTTGGTTGTTGCATTCATGAAGAAGAGAGGATTCTAATTTATGAATATATGCCAAACAAAAGCTTGGATATCTATCTATTTGATTGTACAAGAAGCAAGTTCTTGGATTGGAAGAAGCGGTTCAGCATAATAGAAGGAATTTCTCAAGGATTACTCTATCTTCATAAGTACTCAAGACTCAAAATAATTCATAGAGACTTGAAGGCTAGCAACATACTTCTTGATGAGAATATGAACCCAAAAATTTCAGATTTTGGTATGGCAAGAATATTTACACAACTTGAATCAACATTAAATACCAACAGAATTGTTGGGACATATGGTTACATGTCTCCAGAGTATGCCATGGAAGGAATTTGCTCCACAAAGTCTGATGTCTATAGCTTTGGAGTGTTGCTTCTTGAAATTGTTAGTGGTAGAAGAAACAATAGCTTCTATGATGCAGACCGCCTACTAAACCTAATAGGACATGCATGGGAGCTATGGAATGATGGTGTGTGGCTACAATTAATGGATCCATCATTAAATGACACATTTATTCCTGATGAAGTGCTAAAATGCATTCATGTTGGTCTGTTATGTGTACAACATTATGCAGATGATCGACCTACAATGTCTGACATTATTTCAATGTTAACCAACAGAAGTACAGTTCCTACCTTGCCTAGAAGACCAGCATTCTATGTTGGAAGAGAGAACCTTGAGGGGACATCATCTTCTAAAGTGTCCAACACTGATTTTACAAATGAAACCTTTACCTCTTTCGAAGTAGAAACCAAATGTTGTGCTCTCTCAGAAGTCAAAAATTCATCAACAAGTCCCCACACACACTAA	2430	0.3802	MVCCKLAKLVVFIYLWLWCTSIHVKAVSDSLKPGDTLNSTSTLRSKNGKYYMYFGRTYGDEDSYWTIGTVAGEEILWLSDRNQPIDQNSSLLTLNYSGVLKIESQHGKPIILYSPPNVSVINNNIVATLLDSGNFVLQQLHPNGTKSVVLWQSFDYPVDTLVVTMKLGVNHKTGHNWSLVSCLTNSLSTPGAFSLEWEPKTRELIIKRRGKVCWTSGKLINNRFEHIPKKIQHMNQYIIVSNSDEDSFSFNITTQNKKKFPGWSLKETGQLTSTLGDIARADMCYGYNKTEGGCQKWEDIPTCREPGHVFQKKTGSPNYENATIEPNTGYGNSDCMAICWSNCDCTGFRKYYRNGTGCTFFQCPPEDYSFNNNGENFYMLIKITPHNGTKKWIWRSAVIAAALLIICAFILCLALKKRKYRLKEKIKKTETEMLDLAASNGSSSIKDLEDDLKKGHDMKVFNYTSVLMATSDFSPENKLGQGGFGPVYKGILLTGEEVAVKRLSKNSGQGVVEFKNELTLICELQHTNLVQLLGCCIHEEERILIYEYMPNKSLDIYLFDCTRSKFLDWKKRFSIIEGISQGLLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGMARIFTQLESTLNTNRIVGTYGYMSPEYAMEGICSTKSDVYSFGVLLLEIVSGRRNNSFYDADRLLNLIGHAWELWNDGVWLQLMDPSLNDTFIPDEVLKCIHVGLLCVQHYADDRPTMSDIISMLTNRSTVPTLPRRPAFYVGRENLEGTSSSKVSNTDFTNETFTSFEVETKCCALSEVKNSSTSPHTH*	810

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g02179	809	ProSiteProfiles	Bulb-type lectin domain profile.	28	150	IPR001480	-
	Rops3g02179	809	Pfam	D-mannose binding lectin	75	181	IPR001480	-
	Rops3g02179	809	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	136	772	-	-
	Rops3g02179	809	SUPERFAMILY	Protein kinase-like (PK-like)	458	774	IPR011009	-
	Rops3g02179	809	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	549	752	-	-
	Rops3g02179	809	Gene3D	-	22	154	IPR036426	-
	Rops3g02179	809	Coils	Coil	412	432	-	-
	Rops3g02179	809	Gene3D	Transferase(Phosphotransferase) domain 1	549	752	-	-
	Rops3g02179	809	Pfam	Protein tyrosine and serine/threonine kinase	476	742	IPR001245	GO:0004672\|GO:0006468
	Rops3g02179	809	SMART	serkin_6	473	744	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops3g02179	809	SUPERFAMILY	alpha-D-mannose-specific plant lectins	75	180	IPR036426	-
	Rops3g02179	809	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	438	548	-	-
	Rops3g02179	809	CDD	STKc_IRAK	479	746	-	-
	Rops3g02179	809	SMART	blect_4	28	157	IPR001480	-
	Rops3g02179	809	Gene3D	Phosphorylase Kinase; domain 1	437	548	-	-
	Rops3g02179	809	PIRSF	SRK	276	792	IPR024171	GO:0004674
	Rops3g02179	809	PIRSF	SRK	1	281	IPR024171	GO:0004674
	Rops3g02179	809	ProSiteProfiles	Protein kinase domain profile.	473	753	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops3g02179	809	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	594	606	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g02179	Rops-Chr3	42454025	42458506	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g02179	450	760	Receptor kinase-like Gene Family	AT3G45860	56.550	2.80e-119	374

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Rops3g02179		PK_Tyr_Ser-Thr	5.7e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g02179	-		-	mtr:11409308	995.342