Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02153 ATGGGTTTTGATGATTTCAACAACCTTAAGGATGATGAATATGTGGATGATGAAGGTCCACTTCCAGGATTCAGATTCCACCCAACAGATGAAGAACTTGTAGGTTTCTATCTTCGCAGAAAGCTTGAAAAGAGACCCATTAGTCTCCAACTCATCAAACAGATTGATATCTACAATTATGATCCTTGGGATCTTCCAAGAGCCGGAAGTAGTGGGGATGAAAAGGAGGGGTACTTCTTTTGCAAGAGAGGGAGGAAGTACAGGAATAGTGTAAGGCCAAACAGAGTGACAGGCTCTGGCTTCTGGAAAGCAACAGGGATTGACAAGCCAGTGCACTCACAAGCCAATGACTGCATTATTGGACTCAAGAAAACACTTGTTTACTATCGTGGCAGTGCTGGCAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTCCCCTCTAATAATAATCACACCAACAACAATTCAACTATTGCCCCAGAAGCTGAAATTTGGACATTGTGTAAAATCTTCAAAAGGAATGTATCAAAGAGAAAGTACACACCGGATTTGAGACAATATGCTGCTAAACCTCTTTCCACTGACAAGATCAACAGAATGACAAGTGTGGAGTGTAACACTAATCGAGAAGGGTATATAAATTTTGGTAAAAGCCTAAGTCATTGTCATAATGATCATAAGCTTGTGATTAACAACAACAGAAACAGTGATAATCAAAGGCATCAGTTTCTTGAAGGTCTTATGAGCTCTCCCTTGGCACAATCCCCAATTCAATTGACTACACCATCTTCGAACTTTTGCATTAGCCCTCCAACGAATGATTTCTTCTCATTTGAGAATTGGGACGAGCTTGGGTCGGTTCTGAAGTTTGCTATGGACTCGTCTATGATGTAA 903 0.412 MGFDDFNNLKDDEYVDDEGPLPGFRFHPTDEELVGFYLRRKLEKRPISLQLIKQIDIYNYDPWDLPRAGSSGDEKEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVHSQANDCIIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNNNHTNNNSTIAPEAEIWTLCKIFKRNVSKRKYTPDLRQYAAKPLSTDKINRMTSVECNTNREGYINFGKSLSHCHNDHKLVINNNRNSDNQRHQFLEGLMSSPLAQSPIQLTTPSSNFCISPPTNDFFSFENWDELGSVLKFAMDSSMM* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02153 300 Gene3D NAC domain 29 180 IPR036093 GO:0003677|GO:0006355
Rops3g02153 300 FunFam NAC domain-containing protein 35 29 179 - -
Rops3g02153 300 ProSiteProfiles NAC domain profile. 20 176 IPR003441 GO:0003677|GO:0006355
Rops3g02153 300 SUPERFAMILY NAC domain 16 176 IPR036093 GO:0003677|GO:0006355
Rops3g02153 300 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 234 - -
Rops3g02153 300 Pfam No apical meristem (NAM) protein 22 148 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02153 Rops-Chr3 41687261 41689995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02153 17 194 NAC Transcription Factor Family AT5G39820 54.082 9.55e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops3g02153 NAM 1.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02153 - - gmx:100808692 389.037