Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02152 ATGGGTTTTGATGATTCCAACAACCTTAAGGATGATGAAGGTCCACTTCCAGGGTTCAGATTCCACCCAACAGATGAAGAACTTGTAGGTTTCTATCTTCGCAGAAAGCTTGAAAAGAGACCCATTAGTCTCCAACTCATCAAACAGATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGCTGGGAGTAGTGGTGATGAGAAGGAGTGGTACTTCTTTTGCAAGAGGGGAAGGAAGTACAAGAATAGCATAAGGCCAAACAGAGTAACTGGCTCTGGCTTCTGGAAAGCCACTGGGATTGACAAGCCTGTCTACTCACAAACCAATGACTGCAATATTGGACTCAAGAAAACACTTGTCTACCACATTGGCAGTGCTGGCAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTTCCCTCTAATAATAATCACACCAACACCAACACCAACACCAACAACAGTGCAGCTAATGGCCAAGAAGCTGAAATTTGGACATTGTGTAAAATCTTAAAAAGAAATGTATCAAAGAGAAAGTACACACCTGATTTGAGACAATATGCTGCTAAACCTCTTTTCACTGACAAGATCAACAGAATGAGAAGTGTGGAGTGTAACGCTAATCAGGAAGCGTATATAAATTTCGATATGACCCCTGGAAATTATCACAATGATCATGAGCTTGTGATTAACAACACAAACAATGATCATCAAAGGCATCAGTTTCATGAAGATCATTTGAGCTTTCCCCTGACACAACAACCACCTCAATTAACTACACCATCTTCAAACATTTGCATTAGCCCTGCAGTGAATGATTTCTTCTCATTTGAGAATTGTGATGAGCTTGGCTCGGTTGTGAAGTTTGCTGTTGACTCGCCTATAATGTAA 903 0.4086 MGFDDSNNLKDDEGPLPGFRFHPTDEELVGFYLRRKLEKRPISLQLIKQIDIYKYDPWDLPKAGSSGDEKEWYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKPVYSQTNDCNIGLKKTLVYHIGSAGKGTKTDWMMHEFRLPSNNNHTNTNTNTNNSAANGQEAEIWTLCKILKRNVSKRKYTPDLRQYAAKPLFTDKINRMRSVECNANQEAYINFDMTPGNYHNDHELVINNTNNDHQRHQFHEDHLSFPLTQQPPQLTTPSSNICISPAVNDFFSFENCDELGSVVKFAVDSPIM* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02152 300 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Rops3g02152 300 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 235 - -
Rops3g02152 300 SUPERFAMILY NAC domain 9 176 IPR036093 GO:0003677|GO:0006355
Rops3g02152 300 ProSiteProfiles NAC domain profile. 15 177 IPR003441 GO:0003677|GO:0006355
Rops3g02152 300 FunFam NAC domain-containing protein 35 24 180 - -
Rops3g02152 300 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02152 Rops-Chr3 41629513 41631766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02152 1 195 NAC Transcription Factor Family AT5G39820 52.404 1.22e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops3g02152 NAM 7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02152 - - gmx:100790471 370.933