Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02139 ATGAAGTCAACTGATGCCAATACAACTCCGTTGCCACAAGCAAAGGACCCTTTGTTTGAAATTGCATTGAAGAACAAACTACAGGAATGGTTTTTGGAGCAAATTGTCTTAGGTGGTTGGGTGCTGAAATTCTATGATAGATTTGGGGCTCCCACTCTACAAAATCCTGGTGGAAGTACTGTTGTTTGTAACTACACCAAAGTTGTATCTGGAACTTCAGAAGAGGCAGTTGGTGAAATGATGCAAATGCAACAGCAACCTTTCAGCACTTCAATTCCTTGCCAACTTGAGGACAAGAGGCAAAAACTGGGAATAGTTTATGCTGAGTCTGTTTTTGAAAAAGACCATGAAAAGAAGCTTCCTTGGCGCGTTCGTCGGAGATATGAACTTAAGATAAACCCAGAGAATGGTTTTAATACTTCTGGGGATGGAGCCATGAGGCTTAGAACTCATGTTTGGCATGCAAAGCGGTTTACAATGACCAAACTGTGGGGTTACTACCTTCCCCTGGGTTTTCAAGGAAGAGGGAAAGGTTCAAGAGCACTCTTGAAAAGGCTCGAACAAGGGGTGCTTGTGCACGATGCAAGCTATTATACTGTTGTCCCATTGGAGGGTCCAGAGGATTCGCTAATTTCAGTATTAAGAATAGTACTGGTGCCCTCTCCATTAAAAGTAACACATCCTGGACATCATGACGACTCTGTTCTTTCATGTATAACCTATGGAACTGCAATGCTTTATCAAGTTGGAGCACCAGCTTCTCAGCCAATTGCTCCTGTAACCTATATGTGGCGACCGACTTTCCAACAAAATATGAGTACAGACCTAGATGGCGGAAATCATTACACTTCTTTTAGACAGCATGATATTAGTGATAAGTCAATTAAACATGATGTTGATTTGTATGAAAAATCAGACACAATGATGTGTGATTCTTCATTTAGACACCTTTGGGTGTGGATACATGCTTTTGCCTTTGAAGAAGGATATGATATTCTAAAACTTGCCTGCCGGATAGAGATGGAAAAGAGGGGCATCTCAATTAATTGCTCGTCACTTGAGGGTCAACTTGCGAAATTAGGATTAATGGGATCAGGGACATTTCAACTTCTTCAAAAGATATTGCATCCTGTTAGAGGTATTTCAGAGAATCATTGGCAGTTAAAGAAACATGTGGCTACAGAGGAAGATTGCGTTTCTCAGAATAGAAAGTCATCCATACTGAAAAATGAGGAGCATTTTTCTTCTCTTGCAATGTTATCTCTTAATGTCAGAGATCCTTGA 1284 0.4073 MKSTDANTTPLPQAKDPLFEIALKNKLQEWFLEQIVLGGWVLKFYDRFGAPTLQNPGGSTVVCNYTKVVSGTSEEAVGEMMQMQQQPFSTSIPCQLEDKRQKLGIVYAESVFEKDHEKKLPWRVRRRYELKINPENGFNTSGDGAMRLRTHVWHAKRFTMTKLWGYYLPLGFQGRGKGSRALLKRLEQGVLVHDASYYTVVPLEGPEDSLISVLRIVLVPSPLKVTHPGHHDDSVLSCITYGTAMLYQVGAPASQPIAPVTYMWRPTFQQNMSTDLDGGNHYTSFRQHDISDKSIKHDVDLYEKSDTMMCDSSFRHLWVWIHAFAFEEGYDILKLACRIEMEKRGISINCSSLEGQLAKLGLMGSGTFQLLQKILHPVRGISENHWQLKKHVATEEDCVSQNRKSSILKNEEHFSSLAMLSLNVRDP* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02139 427 Pfam Ribonucleases P/MRP protein subunit POP1 148 205 IPR009723 -
Rops3g02139 427 PANTHER RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1 114 427 IPR039182 GO:0000172|GO:0001682|GO:0005655
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02139 Rops-Chr3 40957707 40961489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02139 1 36 CAMTA Transcription Factor Family AT4G16150 55.556 6.16e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02139 K01164 - gmx:100788705 484.567