Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02130 ATGGGAAGGTGTTTATCACCTATTTTGGTTTTTGAACTTGTTGCTGCTTTTAGTGTCTTCAGCTGCTTGGTTAACCTTGCACAAGCTCAAGCTGCAAACCCCACTACGGATCCTCATGAAGCAAGCGTTTTGAACGCAACGTTCAGCAAATGGGGCATATCAGCAAACAAAACTCAATGGAATATAAGTGGTGAACTATGCAGTGGAAATGCCATTGATAACACCACCACCATCGATGACAACACTTTCAACCCATTCATTAAATGCGATTGTTCCTTTAACAACCGAACCACTTGCCACATCACAGCACTGAAGGTTTATGCATTGGACGTGGTTGGTCAAATTCCTGAAGAGCTATGGACTCTAACTTACCTCACCAATTTGAATCTTGGCCAGAATTACTTGACAGGTTCTCTACCTCCAGCCATTCGGAATCTGACTCGTATGCAATACTTGACCTTTGGCATCAATGCTTTATCAGGGGAGCTTCCAAAGGAATTGGGAAATCTTACCGAGCTAATAGTATTGGGTTTTGGGTCAAACAACTTCTCAGGATCTTTCCCATCTGAACTTGGGAATCTTGAAAAACTGGAACAATTTTACATTGATAGTTCGGGAATTAGTGGTCCAATTCCTTCGTCATTTGCAAACCTTAAGAATTTAATGCAACTATGGGCTTCAGACATGGAACTCACAGGCAACATACCTGACTTCATAGGGAATTGGTCTAAACTTCAAACCTTGAGGTTTCAGGGTAATTCTTTTGAAGGTCCAATACCCTCATCATTTTCCAATTTGACATCTTTGGCAGAGTTGAGAATAAGTGATTTATCTAACGGGAGCTCCTCACTAGAATTTGTAAGGAATTTGAAGTCTTTGGCCATCTTAGAATTGAGGAATAATAATATTTCGGGTTCAATTCCATCCACCATTGGAGAACTTCATAATTTAACCCTGCTGGATTTAAGCTTCAATAACTTCTCAGGACAAATCCCTGGATCAATTTTCAATTCGAGTTCGCTCCAATACTTGTTTCTTGGAAATAACAAACTTAGTGGCACTCTCCCTACCCAGAAAATTTCATCTCTTGAAAATATAGAATTGTCATATAATGATCTATCAGGGAGCCTCCCCTCTTGGGTAAACGAACCAAATTTACAACTGAATTTAGTTGCCAACAACTTGACAATAGAAAATTCAAATAGCAGTGGTTTGCCTATTGGGATCAACTGTCTCCAGAAAAATTTTCCATGCAATCGTGGTGCCGGAAGATATTATGACTTTGCGATCAGGTGCGGTGGTCCCCAAATTACATCCACTGATGGAATTGTGTATCAAACGGACAATGAGACACTTGGTCCTGCCACATACTTTGTTACTGATACAAATAGCTGGGCCGTTAGTAATGTTGGATTATTTTCTGGGAACAACAATCCTTTATACAAAAGTGTTGAGTCTACTCAATTCGTGAACTCCCAAACAGCTCGGCTTTCTGCATCATCGTTAAGATATTATGGCCTGGGGCTGGAAAATGGTTTTTACAACATCACCCTCCAATTTGCAGAAATAGCTATTCTGGGTTCTGCCACCACATGGAAAAGCCTAGGGAGGCGGGTCTTTGATATTTATATCCAGGGGACTCGTGTTTTAAAGGATTTTGACATACAAAGGGAAGCAGGGGGTGTCTCTGATAGAGCTGTCGGAAAGCAATTTAGGTTTGAAGTGAAAGAAAACTATCTTGAGATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCATACCAGCTCAAGGTACTTATGGGCCCTTGATTCAAGCCATCAGTGCTATCCCAGATTTTACACCTACCGTCAGGAAAGAACCTCCAAGCAGTGAAAATAATCCTACCGTCAGTAATGAACCTCCAAGCAGTGAAAATAATAGAACTGGTCTGATTGTTGGAATTGTTGTTGGTGTTGGAGTTGTAAGCTCTCTATCAGTTTTTGCCATTTTCTATTTCATTCAGAGAAAAAAATGTCGTGATGATGAAGAAGAGCTTTTAGGTATTGATACAAAGCCATACACTTTCAGCTATTCTGAGTTAAAGAATGCTACAAATGACTTCAATCTTGACAATAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAGTCATTGCTGTGAAACAACTATCAGTAGGATCCCATCAAGGAAAGAGTCAGTTCATAACTGAGATTGCTACTATATCTGTTGTGCAACATCGTAATCTTGTCAAATTATATGGTTGTTGCATTGAAGGGAGTAAAAGACTTCTTGTTTACGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTATTTGGAAATATTTTATTCCTCAATTGGTCCACACGCTATGATATCTGCTTGGGTGTTGCAAGAGGTTTAACTTATTTACATGAAGAGTCACGGCTCCGTATTGTACACCGTAATGTGAAGGCTAGTAATATTCTGCTTGATTCTGAGCTTGTCCCGAAAATATCTGATTTTGGGTTGGCCAAATTATATGATGATAAAATGACCCATATAAGCACCCGTGTGGCTGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCCGATGTTTTTTCCTTTGGTGTTGTGGCTCTGGAGATAGTTAGTGGGAGGCCAAATTCTGATTCAAGTTTGGAAGGAGAGAAGACGTATCTTCTAGAATGGGCTTGGCAGCTTCATGAAAAGAACTGCATAACTGAGCTGGTAGACCCTAGACTATCAGAATTCAAAGAGGAAGAAGTAAAACGCATTGTTGGAATAGCACTTTTGTGCACTCAGACATCACCAACTTTACGGCCATCAATGTCACGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGAGCATGATAACTTCAAGACCTGGATACTTAACTGACTGGAAATTTGATGATGTGACCAGTATCATGACTAACATTGCAATCAAAGGATCAGATACAAGTTATTACAATTCAACAGCAAGTACCAGTATATTGGGTGGTGCAGACTCTTCACCAATAGATCCTTCTAAAGCCATCCTTCATGAGACTATGGGTGAGGGTAGGTAA 3126 0.4044 MGRCLSPILVFELVAAFSVFSCLVNLAQAQAANPTTDPHEASVLNATFSKWGISANKTQWNISGELCSGNAIDNTTTIDDNTFNPFIKCDCSFNNRTTCHITALKVYALDVVGQIPEELWTLTYLTNLNLGQNYLTGSLPPAIRNLTRMQYLTFGINALSGELPKELGNLTELIVLGFGSNNFSGSFPSELGNLEKLEQFYIDSSGISGPIPSSFANLKNLMQLWASDMELTGNIPDFIGNWSKLQTLRFQGNSFEGPIPSSFSNLTSLAELRISDLSNGSSSLEFVRNLKSLAILELRNNNISGSIPSTIGELHNLTLLDLSFNNFSGQIPGSIFNSSSLQYLFLGNNKLSGTLPTQKISSLENIELSYNDLSGSLPSWVNEPNLQLNLVANNLTIENSNSSGLPIGINCLQKNFPCNRGAGRYYDFAIRCGGPQITSTDGIVYQTDNETLGPATYFVTDTNSWAVSNVGLFSGNNNPLYKSVESTQFVNSQTARLSASSLRYYGLGLENGFYNITLQFAEIAILGSATTWKSLGRRVFDIYIQGTRVLKDFDIQREAGGVSDRAVGKQFRFEVKENYLEIHLFWAGKGTCCIPAQGTYGPLIQAISAIPDFTPTVRKEPPSSENNPTVSNEPPSSENNRTGLIVGIVVGVGVVSSLSVFAIFYFIQRKKCRDDEEELLGIDTKPYTFSYSELKNATNDFNLDNKLGEGGFGPVYKGTLNDGRVIAVKQLSVGSHQGKSQFITEIATISVVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNILFLNWSTRYDICLGVARGLTYLHEESRLRIVHRNVKASNILLDSELVPKISDFGLAKLYDDKMTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALEIVSGRPNSDSSLEGEKTYLLEWAWQLHEKNCITELVDPRLSEFKEEEVKRIVGIALLCTQTSPTLRPSMSRVVAMLSGDIEVSMITSRPGYLTDWKFDDVTSIMTNIAIKGSDTSYYNSTASTSILGGADSSPIDPSKAILHETMGEGR* 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02130 1041 Pfam Protein tyrosine and serine/threonine kinase 702 968 IPR001245 GO:0004672|GO:0006468
Rops3g02130 1041 MobiDBLite consensus disorder prediction 619 638 - -
Rops3g02130 1041 SUPERFAMILY Protein kinase-like (PK-like) 684 992 IPR011009 -
Rops3g02130 1041 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 23 994 - -
Rops3g02130 1041 FunFam Putative LRR receptor-like serine/threonine-protein kinase 777 980 - -
Rops3g02130 1041 FunFam Leucine-rich repeat receptor-like protein kinase 670 776 - -
Rops3g02130 1041 FunFam Leucine-rich repeat receptor-like protein kinase 425 611 - -
Rops3g02130 1041 MobiDBLite consensus disorder prediction 615 638 - -
Rops3g02130 1041 Gene3D Ribonuclease Inhibitor 274 419 IPR032675 -
Rops3g02130 1041 FunFam Leucine-rich repeat transmembrane protein kinase 38 279 - -
Rops3g02130 1041 FunFam Putative LRR receptor-like serine/threonine-protein kinase 280 403 - -
Rops3g02130 1041 Gene3D - 426 611 - -
Rops3g02130 1041 Pfam Leucine rich repeat 292 351 IPR001611 GO:0005515
Rops3g02130 1041 Gene3D Ribonuclease Inhibitor 52 273 IPR032675 -
Rops3g02130 1041 Pfam Malectin domain 427 607 IPR021720 -
Rops3g02130 1041 CDD STKc_IRAK 707 968 - -
Rops3g02130 1041 Gene3D Transferase(Phosphotransferase) domain 1 777 978 - -
Rops3g02130 1041 SUPERFAMILY L domain-like 98 396 - -
Rops3g02130 1041 ProSiteProfiles Protein kinase domain profile. 701 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02130 1041 Gene3D Phosphorylase Kinase; domain 1 665 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02130 Rops-Chr3 40547781 40575723 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02130 106 279 Receptor kinase-like Gene Family AT1G56120 27.586 2.38e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g02130 PK_Tyr_Ser-Thr 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02130 - - gmx:100798233 1630.15