Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02129 ATGGGAAGGTGTTTATCACCTATTTTGGTTTTTGAACTTGTTGCTGCTTTTAGTGTCTTCAGCTGCTTGGTTAACCTTGCACAAGTTCAAGCTGCAAACCCCACCACGGATCCTCATGAAGTGGTTTGCCTATTGGGATCAACTGTCTCCAGAAAAATTTTCCATGCAATCGTGGTGCCGGAAGATGGGACTCGTGTTTTGAAGGATTTTGACATACAAAGGGAAGCAGGGGGTGTCTCTGATAGAGCTGTCGGAAAGCAATTTAGGTTTGAAGTGAAAGAAAACTATCTTGAGATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCATACCAGCTCAAGGTACTTATGGGCCCTTGATTCAAGCCATCAGTGCTACCCCAGATTTTACAACTACCGTCGGTGATGAACCTCTAAGCAGTGAAAATAATAGAGCTAGTCTGATTGTGGGAATTGTTGTTGGTGTTGGAGTTGTAAGCTTTCTATCAGTTTTTGCCATTTTCTATTTCATTCAGAGAAGAAAACACCCTGATTATGAAGAAGAGCTTTTAGGTATTGATACAAAGCCATACACTTTCAGCTATTATGAGTTAAAGAATGCTACAAATGACTTCAATCTTGACAATAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTGATGATGGAAGAGTGATTGCTGTCAAGCAACTGTCTACTCGATCTCGTCAAGGAAACTCAGAGTTCATAACTGAAATTGCTACTATATTGGCAGTGCAACATCGTAACCTTATTAAGTTACACGGATGCTGCATTGAAAGGGATAAACGTCTTCTTGTTTACGAGTATTTAGAAAATGGGAGTCTTAATCAACTACTATTTGGAAAAGATAGTTCAATCCTCAGTTGGCCGATGCGATATCATATCTGCTTGGGCATTGCACGAGGCCTAGCCTATCTCCATGAAGAGTCACAGCTTCGTATAATTCACCGTGATGGGATATTTGGCACCGCGAGTATGCACAGGCGTGGGCACCTCACAGAGAAAGCAGATGTGTTTTCCTTTGGTATTGTGGCTCTAGAGATTGTTAGTGGAAGACAGAATTTTGATTCTAGCTTTGCAATCGAAGGAAATGAGACGTTCCTTCTAGAATGGGCTTGGAATCTATCTATAAACAACAATGAAATTGAGTTGGTGGATTCCAGACTGTCAGAATTTGATGAGATGGAAGTGAAACGAGTTGTTGGCATTTCACTATTGTGCACACAAGCTTCACCTGCCTTACGTCCATCCATGTCCCGCATAGTGGCAATGCTTTCTGGAGATGTTGAAGTGACTCGTGTAAATTCAATGCCTGCATACTTGGCTTATTTGAACTTAGGGGTGATGTCAGCGAATACTCACTAA 1398 0.4192 MGRCLSPILVFELVAAFSVFSCLVNLAQVQAANPTTDPHEVVCLLGSTVSRKIFHAIVVPEDGTRVLKDFDIQREAGGVSDRAVGKQFRFEVKENYLEIHLFWAGKGTCCIPAQGTYGPLIQAISATPDFTTTVGDEPLSSENNRASLIVGIVVGVGVVSFLSVFAIFYFIQRRKHPDYEEELLGIDTKPYTFSYYELKNATNDFNLDNKLGEGGFGPVYKGTLDDGRVIAVKQLSTRSRQGNSEFITEIATILAVQHRNLIKLHGCCIERDKRLLVYEYLENGSLNQLLFGKDSSILSWPMRYHICLGIARGLAYLHEESQLRIIHRDGIFGTASMHRRGHLTEKADVFSFGIVALEIVSGRQNFDSSFAIEGNETFLLEWAWNLSINNNEIELVDSRLSEFDEMEVKRVVGISLLCTQASPALRPSMSRIVAMLSGDVEVTRVNSMPAYLAYLNLGVMSANTH* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02129 465 FunFam Leucine-rich repeat receptor-like protein kinase 175 280 - -
Rops3g02129 465 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 48 329 - -
Rops3g02129 465 SUPERFAMILY Protein kinase-like (PK-like) 188 436 IPR011009 -
Rops3g02129 465 Gene3D Transferase(Phosphotransferase) domain 1 335 455 - -
Rops3g02129 465 Gene3D Transferase(Phosphotransferase) domain 1 281 330 - -
Rops3g02129 465 Gene3D Phosphorylase Kinase; domain 1 169 280 - -
Rops3g02129 465 Pfam Malectin domain 49 124 IPR021720 -
Rops3g02129 465 Gene3D - 36 128 - -
Rops3g02129 465 Pfam Protein tyrosine and serine/threonine kinase 206 329 IPR001245 GO:0004672|GO:0006468
Rops3g02129 465 ProSiteProfiles Protein kinase domain profile. 205 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02129 Rops-Chr3 40514354 40539816 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02129 49 452 Receptor kinase-like Gene Family AT1G56120 54.628 4.28e-162 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g02129 PK_Tyr_Ser-Thr 1.5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02129 - - gmx:100798233 544.273