Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02122 ATGGGAAGGTGTTTATCAACAACTACTTTGGTTTTTGCACTTGTTGCTGCTCTTTGTGTCTTCAGCTGCTTGGTTAATCTTGCACAAGCTCAAACTGCAAATGCCACTACAGATCCTTCTGAAGCTAGAGTTTTGAACGCAATCTTCAGCAAATGGGGCATATCCGCAGACCAAACTCAATGGAATAGAAGTGGTGAACTATGCAGTGGAAGTGCCATTGATAACACCACCGCCGTCGAAACTTACAACCCATTCATCAAATGCGATTGTTCCTTCAACAGTAGAACTACTTGCCACATCACAGCACTGAGGGTTTATGCATTGGACGTGGTTGGTGAAATTCCTGAAGAGCTATGGACTCTAACTTACCTCACCAATTTGAATCTTGGCCAAAATTACTTGACAGGTTCTCTACCTCCAGCCATTGGGAATCTGACTCGTATGCAATACATGACCATTGGCATCAATGCTTTATCAGGGGAGCTTCCAAAGGAATTGGGAAATCTTACCGAGCTAATAGTATTGGGTATTGGGTCAAACAACTTCTCCGGATCTTTCCCATCTGAACTTGGGAATCTTGTAAAATTACAACAACTCTACATGGACAGTTCGGGAATTAGTGGTCCAATTCCTTCCACATTTGCAAACCTTAAGAATTTGATGCAACTATGGGCTTCAGACACGGAACTCGCAGGCAATATACCAGACTTCATAGGGAATTGGTCTAAGCTTCAAACCTTGAGGTTTCAGGGTAATTCTTTTGAAGGTCCAATACCCTCATCATTTTCCAATTTGACATCGTTGACAGAGTTGAGAATAAGTGATTTATCTAATGGGAGCTCCTCACTGGAATTTGTAAGGAATTTGAAGTCTTTGACCATCTTAGAACTGAGGAATAATAATATTTCGGGTTCAATTCCATCCATCATTGGAGAACTTCATAATTTGACCCAGCTGGATTTGAGCTTCAATAACTTCTCAGGACAAATTCCTGGATCAATTTTCAATCTGAGTTCGCTCCAATACTTGTTTCTTGGAAATAACAAACTTAGTGGCACTCTCCCTACCCAGAAAATTTCATCTCTTGAAAATATAGACTTGTCATATAATGATCTATCAGGGAGCCTCCCCTCTTGGGTAAACGAACCAAATTTACAACTGAATTTAGTTGCCAACAACTTGACAATAGAAAATTCAAATAGCAGTGGTTTGCCTATTGGGATCAACTGTCTCCAGAAAAATTTTCCATGCAATCGTGGTGCCGGAAGATATTATGACTTTGCGATCAAGTGCGGTGGTCCCCAAATTACATCCACTGATGGAATTGTGTATCAAATGGACAATGAGACACTTGGTCCTGCCACATACTTTGTTACTGATACAAATAGATGGGCCGTTAGTAATGTTGGATTATTTTCTGGGAGCAACAATCCTCTATACAAAAGTTTTGTGTCTAATCAGTTCACTGGTACTGTGAACACGGAGCTCTTCCAAACAGCTCGGCTCTCTGCATCATCATTAAGATATTATGGCCTGGGGCTGGAAAATGGTTTTTACAACATCACCCTCCAATTCGCAGAAACAGCTATTCAGGATTCTGCCACCACATGGAAAAGCCTAGGGAGACGGGTCTTTGATATTTATATCCAGGGGACTCGTGTTTTGAAGGATTTTGACATACAAAGGGAAGCAGGGGGTGTCTCTTATAGAGCTGTCCAAAAGCAATTTAGGTTTGAAGTGAAAGAAAACTATCTTGAGATCCATCTCTTTTGGGCTGGAAAAGGCACTTGCTGCATACCAGCTCAAGGTACTTATGGGCCCTTGATTCAAGCCATCAGTGCTACCCCAGATTTTACACCTACCGTCAGTAATGAACCTCCAAGCAGTGAAAATAATAGAACTGGTCTGATTGTTGGAATTGTCGTTGGTGTTGGAGTTGTAAGCTTTCTATCAGTTTTTGCCATTTTCTATTTCATTCAGAGAAGAAAACGCCGTGCTGATGAAGAAGAGCTTTTAGGTATTGATACAAAGCCATACACTTTCAGCTATTCTGAGTTAAAGAATGCTACAAATGACTTCAATCTTGACAATAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAGTTATTGGTGTGAAACAACTATCAGTAGGATCCCATCAAGGAAAGAGCCAGTTCATTACTGAGATTGCTACTATATCTGCTGTGCAACATCGTAATCTTGTCAAATTATATGGATGTTGCATTGAAGGGAGTAAAAGACTTCTTGTTTACGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTATTTGGAAATATTTTATTCCTCAATTGGTCCACACGCTATGATATCTGCTTGGGTGTTGCAAGAGGTTTAACTTATTTACATGAAGAGTCACGGCTCCGTATTGTACACCGTGATGTGAAGGCTAGTAATATTCTGCTTGATTATGAGCTTGTCCCGAAAATATCTGATTTTGGGTTGGCCAAATTATATGATGATAAAAAGACCCATATAAGCACCCGTGTGGCCGGGACAATTGGATATCTTGCACCCGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCCGATGTTTTTTCCTTTGGTGTTGTGGCTCTGGAGTTAGTTAGTGGGAGGCCAAATTCTGATTCAAGTTTGGAAGGAGAGAAGATGTATCTTCTAGAATGGGCTTGGCAGCTTCATGAAAAGAATTGCATAACTGATCTGGTAGATCCTAGACTATCAGAATTCAAAGAGGAAGAAGTAAAACGCATTGTTGGAATAGCACTTTTGTGCACTCAGACATCACCAACTTTACGGCCATCAATGTCGCGTGTGGTGGCAATGCTTTCTGGAGATATTGAAGTGAGCATGGTAACTTCAAGACCTGGATACTTAACTGACTGGAAATTTGATGATGTGACCAGTATCATGACTGACATTGCAATCGAAGGATCAGATACAAGTTTTTACAATTCAACAGCAAGTACCAGTATAGTAGGTGGTGCAGACCATTCACCTATGGATTCTTCTAAAGCCATCATCCTTCATGAGACTATGGGTGAGGGTAGGTAA 3105 0.4087 MGRCLSTTTLVFALVAALCVFSCLVNLAQAQTANATTDPSEARVLNAIFSKWGISADQTQWNRSGELCSGSAIDNTTAVETYNPFIKCDCSFNSRTTCHITALRVYALDVVGEIPEELWTLTYLTNLNLGQNYLTGSLPPAIGNLTRMQYMTIGINALSGELPKELGNLTELIVLGIGSNNFSGSFPSELGNLVKLQQLYMDSSGISGPIPSTFANLKNLMQLWASDTELAGNIPDFIGNWSKLQTLRFQGNSFEGPIPSSFSNLTSLTELRISDLSNGSSSLEFVRNLKSLTILELRNNNISGSIPSIIGELHNLTQLDLSFNNFSGQIPGSIFNLSSLQYLFLGNNKLSGTLPTQKISSLENIDLSYNDLSGSLPSWVNEPNLQLNLVANNLTIENSNSSGLPIGINCLQKNFPCNRGAGRYYDFAIKCGGPQITSTDGIVYQMDNETLGPATYFVTDTNRWAVSNVGLFSGSNNPLYKSFVSNQFTGTVNTELFQTARLSASSLRYYGLGLENGFYNITLQFAETAIQDSATTWKSLGRRVFDIYIQGTRVLKDFDIQREAGGVSYRAVQKQFRFEVKENYLEIHLFWAGKGTCCIPAQGTYGPLIQAISATPDFTPTVSNEPPSSENNRTGLIVGIVVGVGVVSFLSVFAIFYFIQRRKRRADEEELLGIDTKPYTFSYSELKNATNDFNLDNKLGEGGFGPVYKGTLNDGRVIGVKQLSVGSHQGKSQFITEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNILFLNWSTRYDICLGVARGLTYLHEESRLRIVHRDVKASNILLDYELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSSLEGEKMYLLEWAWQLHEKNCITDLVDPRLSEFKEEEVKRIVGIALLCTQTSPTLRPSMSRVVAMLSGDIEVSMVTSRPGYLTDWKFDDVTSIMTDIAIEGSDTSFYNSTASTSIVGGADHSPMDSSKAIILHETMGEGR* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02122 1034 Pfam Protein tyrosine and serine/threonine kinase 694 960 IPR001245 GO:0004672|GO:0006468
Rops3g02122 1034 FunFam Putative LRR receptor-like serine/threonine-protein kinase 769 972 - -
Rops3g02122 1034 FunFam Leucine-rich repeat receptor-like protein kinase 424 616 - -
Rops3g02122 1034 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Rops3g02122 1034 SUPERFAMILY Protein kinase-like (PK-like) 676 986 IPR011009 -
Rops3g02122 1034 FunFam Putative LRR receptor-like serine/threonine-protein kinase 279 402 - -
Rops3g02122 1034 CDD STKc_IRAK 699 960 - -
Rops3g02122 1034 Pfam Malectin domain 426 612 IPR021720 -
Rops3g02122 1034 Gene3D - 430 616 - -
Rops3g02122 1034 Gene3D Transferase(Phosphotransferase) domain 1 769 971 - -
Rops3g02122 1034 SUPERFAMILY L domain-like 98 393 - -
Rops3g02122 1034 SMART serkin_6 693 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02122 1034 Gene3D Ribonuclease Inhibitor 238 429 IPR032675 -
Rops3g02122 1034 ProSiteProfiles Protein kinase domain profile. 693 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02122 1034 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 20 986 - -
Rops3g02122 1034 Gene3D Phosphorylase Kinase; domain 1 655 768 - -
Rops3g02122 1034 FunFam Leucine-rich repeat receptor-like protein kinase 662 768 - -
Rops3g02122 1034 Gene3D Ribonuclease Inhibitor 88 237 IPR032675 -
Rops3g02122 1034 FunFam Leucine-rich repeat transmembrane protein kinase 39 278 - -
Rops3g02122 1034 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Rops3g02122 1034 SMART LRR_sd22_2 337 364 - -
Rops3g02122 1034 SMART LRR_sd22_2 289 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02122 Rops-Chr3 40350372 40375911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02122 105 278 Receptor kinase-like Gene Family AT1G56120 27.011 5.94e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g02122 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02122 - - gmx:100798233 1697.95