Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02121 ATGAAGTCAAAATCAAGAGTTTTAAATGCAATCTTCAGCAAATGGGGCAAATCAGCAGACAAAACTAAATGGAATATAAGTGGTGAACTATGCAGTGGAAATGCCATTGATAGCACCACCCCCATCGATGACAACACTTTCAACCCATTCATTAAATGCGATTGTTCCTTTAACAACAGAACCACTTGCCACATCACAGCACTGAAGGTTTATGCATTGGACGTGGTTGGTCAAATTCCTGAAGAGCTATGGACTCTAACTTACCTCACCAATTTGAATCTTGGCCAGAATTACTTGACAGGTTCTCTACCTCCAGCCATTCGGAATCTGACTCGTATGCAATACTTGACCTTTGGCATCAATGCTTTATCAGGGGAGCTTCCAAAGGAATTGGGAAATCTTACTGAGCTAATAGTATTGGGTTTTGGGTCAAACAACTTCTCAGGATCTTTCCCATCTGAACTTGGGAATCTTGAAAAACTAGAACAAGTTTACATTGATAGTTCGGGAATTAGTGGTCCAATTCCTTCGTCATTTGCAAACCTTAAGAATTTAATGCAACTATGGGCTTCAGACATGGAACTCACAGGCAACATACCAGACTTCATAGGGAATTGGTCTAAACTTCAAACCTTGAGGGGTAATTCTTTTGAAGGTCCAATACCCTCATCATTTTCCAATTTGACTTCTTTGTCAGAGTTGAGAATAAGTGATTTATCTAATGGGAGCTCCTCACTGGAATTTATAAGGAATTTGCAGTCTTTGACTACCTTAGAACTGAGGAATAACAATATTTCGGGTTCAATTCCATCCATCATTGGAGAACTTCATAATTTGACCCAGCTGGATTTAAGCTTCAATAACTTCTCAGGACAAATTCCTGGATCAATTTTTAATTTGAGTTCACTCCAATACTTGTTTCTTGGAAATAACAAACTTAGTGGCACTCTCCCTACCCATAAAAGTTCATCACTTGAAAATATAGACTTGTCATATAATGATCTATCAGGGAGCCTCCCCTCTTGGGTAAACGAACCAAATTTACAACTGAATTTAGTTGCCAACAACTTGACAATAGAAAATTCAAATAGCAGTGGTTTGCCTATTGGGATCAACTGTCTCCAGAAAAATTTTCCATGCAATCGTGGTGCCGGAAGATATTATAACTTTGCGATCAAGTGCGGTGGTCCCCAAATTACATCCACAGATGGAATTGTGTATGAAATGGACAATGAGACACTTGGTCCTGCCACATACTTTGTTACTGATACAAATAGATGGGCCGTTAAAACAGCTATTCAGGATTCTGCCACCACATGGAAAAGCCTCGGGAGACGGGTCTTTGATATTTATATCCAGGGGACTCGTGTTTTGAAGGATTTTGACATACAAAGGGAAGCAGGGGGTGTCTCTTATAGAGCTGTCCAAAAGCAATTTAGGTTTGAAGTGAAAGAAAACTATCTTGAGATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCATACCAGCTCAAGGTACTTATGGGCCCTTGATTCAAGCCATCAGTGCTACCCCAGATTTTACACCTACCGTCAGTAATGAACCTCCAAGCAGTGGAAATAATAGAACTGGTCTGATTGTTGGAATTGTTGTTGGTGTTGGAGTTGTAAGCTTTCTATCAGTTTTTTCCATTTTCTATTTCATTCAGAGAAGAAAACGCCATGATGATGAAGAAGAGCTTTTAGGTATTGATACAAAGCCATACACTTTCAGCTATTCTGAGTTAAAGAATGCTACAAATGACTTCAATATTGACAATAAGCTTGGAGAGGGAGGTTTTGGACCAGTTTATAAGGGGACACTTAATGATGGAAGAATCATTGCTGTGAAACAACTATCAGTAGGATCCCATCAAGGAAAGAGCCAGTTCATAACTGAGATTGCTACTATATCTGCTGTGCAACATCGTAATCTTGTCAAATTATATGGATGTTGCATTGAAGGGAGTAAAAGACTTCTTGTTTACGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTATTTGGAAATATTTTATTCCTCAATTGGTCCACACGCTATGATATCTGCTTGGGTGTTGCAAGAGGTTTAACTTATTTACATGAAGAGTCACGGCTCCGTATTGTACACCGTGATGTGAAGGCTAGTAATATTCTGCTTGATTATGAGCTTGTCCCGAAAATATCTGATTTTGGGTTGGCCAAATTATATGATGATAAAATGACCCATATAAGCACTCGTGTGGCTGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCCGATGTTTTTTCCTTTGGTGTTGTGGCTCTGGAGTTAGTTAGTGGGAGGCCAAATTCTGATTCAAGTTTGGAAGGAGAGAAGATGTATCTTCTAGAATGGGCTTGGCAGCTTCATGAAAAGAACTGCATAACTGAGCTGGTAGACCCTAGACTATCAGAATTCAAAGAGGAAGAAGTAAAACGCATTGTTGGAATAGCACTTTTGTGCACTCAGACATCACCAACTTTACGGCCATCAATGTCGCGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGAGCATGATAACTTCAAGACCTGGATACTTAACTGACTGGAAATTTGATGATGTGACCAGTATCATGACTAACATTGCAATCAAAGGATCAGATACAAGTTATTACAATTCAACAGCAAGTACCAGTATAGTGGGTGGTGCAGACTCTTCACCAATAGATCCTTCTAAAGCCATCCTTCATGATGAGACTATGAGTGAGGGTAGTAACTCAAGATCAGTGTGGAATTTATTTTCACAAAATCAAAAACTAGATCTGATTTATTTTGCAGGAAACGTGGTGCTCATTTTGCAAATCTGGTCTATTCCCTTAAGGACAACTTAA 2928 0.3955 MKSKSRVLNAIFSKWGKSADKTKWNISGELCSGNAIDSTTPIDDNTFNPFIKCDCSFNNRTTCHITALKVYALDVVGQIPEELWTLTYLTNLNLGQNYLTGSLPPAIRNLTRMQYLTFGINALSGELPKELGNLTELIVLGFGSNNFSGSFPSELGNLEKLEQVYIDSSGISGPIPSSFANLKNLMQLWASDMELTGNIPDFIGNWSKLQTLRGNSFEGPIPSSFSNLTSLSELRISDLSNGSSSLEFIRNLQSLTTLELRNNNISGSIPSIIGELHNLTQLDLSFNNFSGQIPGSIFNLSSLQYLFLGNNKLSGTLPTHKSSSLENIDLSYNDLSGSLPSWVNEPNLQLNLVANNLTIENSNSSGLPIGINCLQKNFPCNRGAGRYYNFAIKCGGPQITSTDGIVYEMDNETLGPATYFVTDTNRWAVKTAIQDSATTWKSLGRRVFDIYIQGTRVLKDFDIQREAGGVSYRAVQKQFRFEVKENYLEIHLFWAGKGTCCIPAQGTYGPLIQAISATPDFTPTVSNEPPSSGNNRTGLIVGIVVGVGVVSFLSVFSIFYFIQRRKRHDDEEELLGIDTKPYTFSYSELKNATNDFNIDNKLGEGGFGPVYKGTLNDGRIIAVKQLSVGSHQGKSQFITEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNILFLNWSTRYDICLGVARGLTYLHEESRLRIVHRDVKASNILLDYELVPKISDFGLAKLYDDKMTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSSLEGEKMYLLEWAWQLHEKNCITELVDPRLSEFKEEEVKRIVGIALLCTQTSPTLRPSMSRVVAMLSGDIEVSMITSRPGYLTDWKFDDVTSIMTNIAIKGSDTSYYNSTASTSIVGGADSSPIDPSKAILHDETMSEGSNSRSVWNLFSQNQKLDLIYFAGNVVLILQIWSIPLRTT* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02121 975 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672|GO:0006468
Rops3g02121 975 Gene3D Phosphorylase Kinase; domain 1 558 671 - -
Rops3g02121 975 Gene3D - 433 519 - -
Rops3g02121 975 Gene3D Transferase(Phosphotransferase) domain 1 672 873 - -
Rops3g02121 975 SMART serkin_6 596 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02121 975 SMART LRR_sd22_2 252 278 - -
Rops3g02121 975 SMART LRR_sd22_2 300 330 - -
Rops3g02121 975 FunFam Putative LRR receptor-like serine/threonine-protein kinase 672 875 - -
Rops3g02121 975 FunFam Leucine-rich repeat receptor-like protein kinase 565 671 - -
Rops3g02121 975 FunFam Putative LRR receptor-like serine/threonine-protein kinase 242 365 - -
Rops3g02121 975 Pfam Leucine rich repeat 254 313 IPR001611 GO:0005515
Rops3g02121 975 Pfam Malectin domain 441 515 IPR021720 -
Rops3g02121 975 Gene3D Ribonuclease Inhibitor 243 368 IPR032675 -
Rops3g02121 975 Gene3D Ribonuclease Inhibitor 2 242 IPR032675 -
Rops3g02121 975 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 7 890 - -
Rops3g02121 975 CDD STKc_IRAK 602 863 - -
Rops3g02121 975 ProSiteProfiles Protein kinase domain profile. 596 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02121 975 SUPERFAMILY Protein kinase-like (PK-like) 579 887 IPR011009 -
Rops3g02121 975 Pfam Protein tyrosine and serine/threonine kinase 597 863 IPR001245 GO:0004672|GO:0006468
Rops3g02121 975 FunFam Leucine-rich repeat transmembrane protein kinase 2 241 - -
Rops3g02121 975 ProSiteProfiles Leucine-rich repeat profile. 254 276 IPR001611 GO:0005515
Rops3g02121 975 SUPERFAMILY L domain-like 62 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02121 Rops-Chr3 40294117 40334931 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02121 113 921 Receptor kinase-like Gene Family AT1G56120 59.633 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g02121 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02121 - - jre:109001730 1324.69