LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g02119	ATGGGAAGGTGTTTATCACCTACTTTGGCTTCTGCACTTGTTGCTGCTCTTTGTGTCTTCGGCTGCTTGGTTAATCTTGCACAAGCTCAAACTTCCAACGCCACTACAGATCCTTATGAAGCAAGAGTTTTAAATGCAATCTTCAGCAAATGGGGCATATCAGCAGACAAGATTCAATGGAATATAAGTGGTGAACTATGCAGTGGAAGTGCCATTGATGACACCACCCCTCTCCAAACTTACAACCCATTCATCAAATGTGACTGTTCCTATAACAATGGAACCACTTGCCACATCACAGCACTGAGGGTTTATGCTTTGGACGTGGTTGGTGAAATTCCTAAAGAGCTATGGACTCTAACTTACATCGATGATTTGGATCTTCGTCAGAATTACTTGACGGGTTTTCTACCTCCAGCCATTGGGAATCTTACTCGTATGCAATACATGAGCTTTGGCACCAATGCTTTATCAGGGGAGATTCCAAAGGAATTGGGAAATCTTACCGAGTTATTATCACTGGGTATTGGGTCAAACAACTTCTCAGGATCTTTGCCACCTGAACTTGGGAATCTTGTAAAATTACAACAACTATACATGGGTAGTTCCGGAATTAGTGGTCCAATTCCTTCCACATTTGCAAACCTTAAGAATTTGTTGCAAGCATGGGCTCCAGACATGGAACTCACAGGAAATATACCAGACTTCATAGGGAATTGGTCCAAACTTCAAACCCTGAGGTTTCAGGGTAATTCTTTTGAAGGTCCAATACCCTCGTCATTTTCCAGTTTGACTTCTATGGCAGAGTTGAGAATAAGTGGTTTATCTAATGGGAGCTTCTCACTGGAATTTGTAAGGAAGATGAAGTCATTGGCTATCTTAGAACTGAAGAATAACAATATTTCGGGTTCAATTCCATCCTTCATTGGAGAACTTCAAAATTTGACCCAGTTGTTTCTTGGAAATAACAAACTTAGTGGCACTCTCCCTACGCAGAAAAGTTCATCTCTTCAATATATAGACTTGTCATATAACGATCTATCTGGAAGCCTCCCCTCTTGGGTAAATGGACAAAATTTACAACTGAATTTAGTAGCCAACAACTTGACAATAGAAAATTCAAAAAGCAGTGGTTTACCTACTGGGCTCAACTGTCTCCAGAAAAATTTTCCATGCAATCGTGGAGCTGGAAGATATTATAACTTTGCGATCAAGTGTGGTGGTCCCCAAATTACATCCATGGATGGAACTGTGTATCAAATGGACAATGAGACACTTGGTCCCTCTACATACTTTGTTACTGATACAGATAGATGGGCCGTTAGTAATGTTGGATTATTTACTGGGAACAACAATCCTTTATACAAAAGTTTTGTGTCTAATCAGTTCACCGGTACTGTGAACTCAGAGCTTTTCCAAAGAGCTCGGCTCTCTGCATCATCGTTAAGATATTATGGCCTGGGGCTGGAAAATGGTTTTTACAACATCACCCTCCAATTTGCAGAAACAGCTATTATGGATTCTAACACATGGAAAAGCCTTGGCAGACGGGTCTTTGACATTTATATCCAGGGGACCCGTGTCCTGAAGGATTTTGACATAAAAAGGGAAGCTGGGGGCGTCTCTTATAGAGCTGTCCAAAAGCAATTTAGGTTTGAAGTGAAAGAAAACTATCTTGAGATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCATACCAGCTCAAGGTACTTATGGGCCCTTGATTCAAGCCATCAGTGCTACCCCAGATTTCACACCTACTGTCAGTAATGAACCTCCAGGCAGTGAAAATAATAGAACTGGTCTGATCGTTGGAATTGTTGTTGGTGTTGGAGTTGTAAGCTTTCTATCAGTTTTTGTCATTTTCTATTTCATTCAGAGAAGAAAATGCCATGACGATGAAGAAGAGCTTTTAGGTATTGATGCAAAACCATACACTTTCAGCTATTCCGAGTTAAAGAATGCTACAAATGACTTCAATCTTGACAATAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAGTTATTGCTGTGAAGCAACTATCAGTAGGATCCCATCAAGGAAAGAGCCAGTTCATAACCGAGATTGCTACTATATCCGCTGTGCAACATCGTAATCTTGTCAAATTATATGGATGTTGTATTGAAGGGAGTAAAAGACTTATTGTCTACGAGTTTCTAGAAAATAAGAGTCTTGATCAAGCATTATTTGGAAATATTTTATTCCTCAATTGGTTCGCACGCTATGATATCTGCTTGGGTGTTGCAAGAGGTTTAACTTATTTACATGAGGAGTCACGGCTCCGTATTGTACACCGTGATGTGAAGGCTAGTAATATTCTGCTTGATTATGAGCTTGTCCCGAAAATATCTGATTTTGGGTTGGCCAAATTATATGATGATAAAATGACCCATATAAGCACCCGTGTGGCTGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGGGGACATCTTACAGAGAAAGCTGATGTTTTTTCCTTCGGTGTTGTGGCTCTAGAGTTAGTTAGTGGGAGGCCAAATTCAGATTCAAGTTCGGAAGGAGAGAAGATGTATCTTCTAGAATGGGCTTGGCAGCTTCATGAAAACAACTGCATAACTGAGCTGGTAGACCCTAGACTATCAGAATTCAAAGAGGAAGAAGTAAAACGCGTTGTTGGAATAGCATTTTTGTGCACTCAGACATCACCAGCTTTACGGCCATCAATGTCACGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGAGCACTGTGACTTCAAGACCTGGATACTTGACTGACTGGAAATTTGATGATGAGACAACCAGTTTTATGACTGACATTGCAATCAAAGGATTAGATACAAGTTTTTACAATTCAACGGCAAGTACCAGTATAGTGGGTGGTGCAGACTCTTCGCCAATAGATCCTTCTAAAGCCATCCTTCATGATGAGACTATGAGTGAGGGTAGGTAA	3030	0.4092	MGRCLSPTLASALVAALCVFGCLVNLAQAQTSNATTDPYEARVLNAIFSKWGISADKIQWNISGELCSGSAIDDTTPLQTYNPFIKCDCSYNNGTTCHITALRVYALDVVGEIPKELWTLTYIDDLDLRQNYLTGFLPPAIGNLTRMQYMSFGTNALSGEIPKELGNLTELLSLGIGSNNFSGSLPPELGNLVKLQQLYMGSSGISGPIPSTFANLKNLLQAWAPDMELTGNIPDFIGNWSKLQTLRFQGNSFEGPIPSSFSSLTSMAELRISGLSNGSFSLEFVRKMKSLAILELKNNNISGSIPSFIGELQNLTQLFLGNNKLSGTLPTQKSSSLQYIDLSYNDLSGSLPSWVNGQNLQLNLVANNLTIENSKSSGLPTGLNCLQKNFPCNRGAGRYYNFAIKCGGPQITSMDGTVYQMDNETLGPSTYFVTDTDRWAVSNVGLFTGNNNPLYKSFVSNQFTGTVNSELFQRARLSASSLRYYGLGLENGFYNITLQFAETAIMDSNTWKSLGRRVFDIYIQGTRVLKDFDIKREAGGVSYRAVQKQFRFEVKENYLEIHLFWAGKGTCCIPAQGTYGPLIQAISATPDFTPTVSNEPPGSENNRTGLIVGIVVGVGVVSFLSVFVIFYFIQRRKCHDDEEELLGIDAKPYTFSYSELKNATNDFNLDNKLGEGGFGPVYKGTLNDGRVIAVKQLSVGSHQGKSQFITEIATISAVQHRNLVKLYGCCIEGSKRLIVYEFLENKSLDQALFGNILFLNWFARYDICLGVARGLTYLHEESRLRIVHRDVKASNILLDYELVPKISDFGLAKLYDDKMTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSSSEGEKMYLLEWAWQLHENNCITELVDPRLSEFKEEEVKRVVGIAFLCTQTSPALRPSMSRVVAMLSGDIEVSTVTSRPGYLTDWKFDDETTSFMTDIAIKGLDTSFYNSTASTSIVGGADSSPIDPSKAILHDETMSEGR*	1010

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g02119	1009	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	786	798	IPR008271	GO:0004672\|GO:0006468
	Rops3g02119	1009	Gene3D	Ribonuclease Inhibitor	279	387	IPR032675	-
	Rops3g02119	1009	MobiDBLite	consensus disorder prediction	986	1009	-	-
	Rops3g02119	1009	Gene3D	Phosphorylase Kinase; domain 1	631	742	-	-
	Rops3g02119	1009	CDD	STKc_IRAK	673	934	-	-
	Rops3g02119	1009	Pfam	Malectin domain	401	586	IPR021720	-
	Rops3g02119	1009	FunFam	Leucine-rich repeat receptor-like protein kinase	399	590	-	-
	Rops3g02119	1009	FunFam	Leucine-rich repeat receptor-like protein kinase	636	742	-	-
	Rops3g02119	1009	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	743	946	-	-
	Rops3g02119	1009	FunFam	Leucine-rich repeat transmembrane protein kinase	38	277	-	-
	Rops3g02119	1009	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	21	964	-	-
	Rops3g02119	1009	ProSiteProfiles	Protein kinase domain profile.	667	940	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops3g02119	1009	Gene3D	Transferase(Phosphotransferase) domain 1	743	945	-	-
	Rops3g02119	1009	Gene3D	-	399	590	-	-
	Rops3g02119	1009	SUPERFAMILY	L domain-like	89	367	-	-
	Rops3g02119	1009	SMART	serkin_6	667	934	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops3g02119	1009	SUPERFAMILY	Protein kinase-like (PK-like)	651	964	IPR011009	-
	Rops3g02119	1009	Gene3D	Ribonuclease Inhibitor	39	278	IPR032675	-
	Rops3g02119	1009	Pfam	Protein tyrosine and serine/threonine kinase	668	934	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g02119	Rops-Chr3	40176675	40221328	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g02119	147	1009	Receptor kinase-like Gene Family	AT1G56120	62.317	0.0	1108

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Rops3g02119		PK_Tyr_Ser-Thr	2.6e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g02119	-		-	gmx:100798233	1573.14