Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02114 ATGTTGGGGAGTGCTTCCTCTTGTTTGAATTTATTCTCTTTCCCACCATTTTCTAAGCCAGGTGACCTTGGAACTGAGTCTTCTATAGCAAGAGGAGATCCTGAAATCGATGAAGAACTTTCAGGCATTCAAAATGTAAGAATATATACCTACAAAGAACTGAAAATTGCCTCTGACGATTTCAGTCCGGCTAATAAAATTGGGGAGGGTGGTTTTGGTTCTGTCTATAAGGGATTGCTAAAAGACGGGAAAGTGGCTGCTATAAAAGCTCTTTCAGCTGAGTCAAGACAAGGGGTGAAGGAATTCCTGACAGAGATTAATGTGATCTCGGAAATAGAGCATGAAAATTTGGTTAAACTATATGGTTGTTGTGTGGAAGGAAATCATCGAATATTAGTCTACAATTACCTTGAGAACAATAGCCTTGCACAAACCCTGCTAGGTGGAGGTCATAGTAATATTTACTTCAATTGGCGAACACGATCTAGGATATGCATTGGGGTTGCACGTGGGCTTGCCTTTCTTCACGAGGAAGTACAACCATATATTGTTCATAGAGATATAAAAGCGAGCAATATTCTCCTTGACAAAGACCTTACACCTAAGATTTCGGATTTTGGTCTTGCAAAGCTTATTCCAACATACATGACTCATGTCAGCACACGTGTAGCAGGAACAATAGGTTATTTGGCACCGGAGTATGCAATAAGGGGTCAGCTGACACGTAAAGCAGATATTTACAGTTTTGGTGTCCTCCTTGTGGAGATAGTCAGTGGGAGATGTAACACAAATACAATGTTACCAATAGGAGATCAATTTATTCTAGAAAAGACATGGGAACTTTATGAGCGAAGGGAATTGGTAGGGCTGGTAGACATATCACTAAATGGGGAATTCGATGCTGAGGAGGCTTGTAAGATTCTGAAAATTGGCCTTCTTTGCACTCAGGATACTCCTAAGCTCAGGCCATCCATGTCTTCTGTGGTCAAGATGCTCACTGGAGAAATGGATTTTGATGAAAGGAAGATAACAAAACCAGGCTTGATTTCAGATGTTATGGACCTTAAAATCAGAGAACCAAAAAATAATAATAGTATGAAGACTTCATCTTCATCCAATGCTTCTTCCTCTACCTCAGACAGCCAGGGTACTACCATGTCATTAGCTGCTTCAAGTTCTGCATCGTCACCCTTCAATGTGAAACATGATCAAAGCATTTAG 1221 0.4046 MLGSASSCLNLFSFPPFSKPGDLGTESSIARGDPEIDEELSGIQNVRIYTYKELKIASDDFSPANKIGEGGFGSVYKGLLKDGKVAAIKALSAESRQGVKEFLTEINVISEIEHENLVKLYGCCVEGNHRILVYNYLENNSLAQTLLGGGHSNIYFNWRTRSRICIGVARGLAFLHEEVQPYIVHRDIKASNILLDKDLTPKISDFGLAKLIPTYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVSGRCNTNTMLPIGDQFILEKTWELYERRELVGLVDISLNGEFDAEEACKILKIGLLCTQDTPKLRPSMSSVVKMLTGEMDFDERKITKPGLISDVMDLKIREPKNNNSMKTSSSSNASSSTSDSQGTTMSLAASSSASSPFNVKHDQSI* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02114 406 SMART serkin_6 61 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02114 406 FunFam cold-responsive protein kinase 1 137 348 - -
Rops3g02114 406 FunFam cold-responsive protein kinase 1 32 136 - -
Rops3g02114 406 CDD STKc_IRAK 67 334 - -
Rops3g02114 406 MobiDBLite consensus disorder prediction 354 406 - -
Rops3g02114 406 ProSitePatterns Protein kinases ATP-binding region signature. 67 89 IPR017441 GO:0005524
Rops3g02114 406 Gene3D Phosphorylase Kinase; domain 1 33 136 - -
Rops3g02114 406 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 44 376 - -
Rops3g02114 406 ProSiteProfiles Protein kinase domain profile. 61 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02114 406 Pfam Protein kinase domain 64 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02114 406 SUPERFAMILY Protein kinase-like (PK-like) 40 332 IPR011009 -
Rops3g02114 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Rops3g02114 406 Gene3D Transferase(Phosphotransferase) domain 1 137 346 - -
Rops3g02114 406 MobiDBLite consensus disorder prediction 362 406 - -
Rops3g02114 406 PIRSF TyrPK_CSF1-R 294 406 - -
Rops3g02114 406 PIRSF TyrPK_CSF1-R 61 142 - -
Rops3g02114 406 PIRSF TyrPK_CSF1-R 163 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02114 Rops-Chr3 39906596 39917034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02114 31 351 Receptor kinase-like Gene Family AT1G56120 53.560 4.13e-111 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g02114 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02114 - - gmx:100800503 595.119