Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02112 ATGGAGAAAGGAAGAAAACCATGTCGTGATGAGAATAACGTGAAGAAATGCCATTGGAGCAATGAAGAAGACCTAAAGTTAATAGCTTTCATCCAGAAACATGGCCATGATAATTGGTGTGCTCTCCCCAAACAAGCAGGGCTTAAGCGAAGTGGAAAAAGTTGTCGTTTGAGATGGGTGAATTATCTTAGGCCTGATTTGAAAAGGGGGAATTTTACAGAAGAGGAAGAGCAAACCATAATAAGGCTACAAGAGGCCTGGGGAAACAAGTGGTCAAAGATTGCATCCAATTTTCCAGGTAGAACGGACAATGATATCAAGAATCTATGGTACACCCACTTAAAGAAAAGATTAGCTACCAAAAATAAACCAGGGTTTAGTATATGTGGATTGAAGCTGAAATCATCCATCACATCCTCCTCTTCATCTTTATCTGAATCAAATTTCTCAAATGAGATACCAAATTCTGTCATAACTACTATCGGTAATGAATTTGATATACGAGCATCCCAAGTGACAATGATGCAAAAGTTTGATCCAAATTTAGTAAAACAAATGTCTAATGAACTTATTGGAATCCCTAAGAACCCATATGAGTCATCTACTTCACTGTCTTTGATTGAGTCAAACACCTTCAATTCAAGCGAGATTGTTGCTTACAAACAAGAACAACAAATGGGTTCTCCATTCAGAAAAGTAGGAGCTGCTGAAGTTAACAATGTGTTACAAGAGGTGGATAAACCCCTAATTCTTGAAATACCGTTCGAGTCAGATTATGACATTTCTGAGTTGTTAGATAACTCGGGATCTATTGAGTCGAACCCAATCCAACTAAGCCAAGTTGATGGAAACCAAACCCTAAATGTTGGACAGGAAAGTGTTCAAGATACTGAATTCTGGAAGTGGTTTCATGACTTTGATAATGAGATGGGATTAGTTTCATCAGTGGAGGCAAAAAAAGACCAGTTTCAACAGAAGAATAACAGAACTGACCCAGGAATGGACCCTCATTTACATGATTTTGATGCAATGATGTGGCCAAATTCTGATCTAGAACTAGGTTTTGATCAACAGGGTTCCTCTTGTTCTCACAAGCATGCTCTTTAA 1107 0.3821 MEKGRKPCRDENNVKKCHWSNEEDLKLIAFIQKHGHDNWCALPKQAGLKRSGKSCRLRWVNYLRPDLKRGNFTEEEEQTIIRLQEAWGNKWSKIASNFPGRTDNDIKNLWYTHLKKRLATKNKPGFSICGLKLKSSITSSSSSLSESNFSNEIPNSVITTIGNEFDIRASQVTMMQKFDPNLVKQMSNELIGIPKNPYESSTSLSLIESNTFNSSEIVAYKQEQQMGSPFRKVGAAEVNNVLQEVDKPLILEIPFESDYDISELLDNSGSIESNPIQLSQVDGNQTLNVGQESVQDTEFWKWFHDFDNEMGLVSSVEAKKDQFQQKNNRTDPGMDPHLHDFDAMMWPNSDLELGFDQQGSSCSHKHAL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02112 368 FunFam MYB-related transcription factor 15 68 - -
Rops3g02112 368 SMART sant 15 65 IPR001005 -
Rops3g02112 368 SMART sant 68 116 IPR001005 -
Rops3g02112 368 Gene3D - 16 68 - -
Rops3g02112 368 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Rops3g02112 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Rops3g02112 368 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Rops3g02112 368 Gene3D - 70 128 - -
Rops3g02112 368 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Rops3g02112 368 CDD SANT 71 114 IPR001005 -
Rops3g02112 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 215 - -
Rops3g02112 368 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Rops3g02112 368 Pfam Myb-like DNA-binding domain 18 63 IPR001005 -
Rops3g02112 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Rops3g02112 368 CDD SANT 19 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02112 Rops-Chr3 39843726 39853894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02112 1 312 MYB Transcription Factor Family AT1G79180 38.571 1.56e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops3g02112 Myb_DNA-binding 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02112 K09422 - gmx:100101836 363.229