Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02111 ATGGCTGCGGTTGCTGAGATTCCTTCTGATGTAGCAGCTGCAACCAAATTGGACTCGAAACCAAAACAACAAGAATCTGAATTCAATGTGCAGAAGCTTGTTGATATTTTCACAAAGTTGAATCCTTCTGCCAAGGAGTTTTTCCCTTCATCTTATTCTCACCGTGATCACATTCATCAGAGCAATAATCAGTTGCCACCCAACAAGTTTCAGGGCAACAACAAGCCCTTAGCTAATGATCATTACCCAAACAATCGAAGGAGAAAAAATAATCATAACCAAGGGGGAAGAAGATTTAATGGAAAAGTACTTAAGGCTCAGAGAGAAGATAGCATTAGAAGAACGGTATATGTTTCTGATATTGATCTGAATGTAACTGAGGAGCGACTTGCTGCCTTATTCAGCACTTGTGGACCGGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCATTTGTGGAGTTCGCATATGAGCATGGTGCAAGGGCAGCTTTAAATCTTCATGGTACTGTGCTTGGATACTATCCAGTCAGGGTCCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCAAGCTCAGATGATGAGCGGGAAATGTGTTCCAGGACTGTCTACTGTACAAATATTGACAAAAAGGTTTCTCAGGCTGAAGTGAAGAATTTCTTTGAAATATCTTGTGGTGAGGTTACTCGCTTGAGGCTTTTAGGAGATCATGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCAGAAAGTGCCATTTTTGCACTAAGTTGTAGTGGGATGCTCTTGGGAACCCAGCCTGTTAGGGTAAGTCCTTCAAAGACACCTGTGAGGCCAAGGGTTCTTCGTGCAACACCAGCACATTAG 903 0.4241 MAAVAEIPSDVAAATKLDSKPKQQESEFNVQKLVDIFTKLNPSAKEFFPSSYSHRDHIHQSNNQLPPNKFQGNNKPLANDHYPNNRRRKNNHNQGGRRFNGKVLKAQREDSIRRTVYVSDIDLNVTEERLAALFSTCGPVIDCRICGDPHSVLRFAFVEFAYEHGARAALNLHGTVLGYYPVRVLPSKTAILPVNPTFLPSSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRLRLLGDHVHSTRIAFVEFAMAESAIFALSCSGMLLGTQPVRVSPSKTPVRPRVLRATPAH* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02111 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 189 IPR000504 GO:0003723
Rops3g02111 300 FunFam Polyadenylate-binding protein-interacting protein 11 79 191 - -
Rops3g02111 300 FunFam Polyadenylate-binding protein-interacting protein 10 205 283 - -
Rops3g02111 300 CDD RRM1_CID8_like 112 191 IPR034823 -
Rops3g02111 300 MobiDBLite consensus disorder prediction 54 80 - -
Rops3g02111 300 SUPERFAMILY RNA-binding domain, RBD 77 190 IPR035979 GO:0003676
Rops3g02111 300 SUPERFAMILY RNA-binding domain, RBD 200 292 IPR035979 GO:0003676
Rops3g02111 300 Gene3D - 199 292 IPR012677 -
Rops3g02111 300 Gene3D - 56 190 IPR012677 -
Rops3g02111 300 MobiDBLite consensus disorder prediction 54 100 - -
Rops3g02111 300 SMART rrm1_1 212 283 IPR000504 GO:0003723
Rops3g02111 300 SMART rrm1_1 115 185 IPR000504 GO:0003723
Rops3g02111 300 Pfam Ataxin-2 C-terminal region 36 51 IPR009818 -
Rops3g02111 300 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 37 292 - -
Rops3g02111 300 CDD RRM2_CID8_like 207 288 IPR034825 -
Rops3g02111 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 178 IPR000504 GO:0003723
Rops3g02111 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 279 IPR000504 GO:0003723
Rops3g02111 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 287 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02111 Rops-Chr3 39785368 39797857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02111 111 268 Eukaryotic Initiation Factors Gene Family AT1G34140 26.708 1.98e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02111 - - lja:Lj3g3v0409470.1 491.5