Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02105 ATGGCTTTGCTGTGTGGTTCAGCTTCAGTGACATTCCTTCCATCTTCATTCACTCCTCACAAAAATGCAACAATAAAATCAACCTTTGTTGGTTCCCAATTGGCACTACCAAAGCTTTCATTATCATCATCTTCTTCTTCTGTTTGTACGCATTTCCCTTCAGCTTTTCGTGTCCATTGTCAGCAAGACTCTTCCTCTGTCCCACAAGAACAAGTCCCACCACAAGAACAAGATCCAAGATTCATGTGTGTGGAACCTGAGCCTCGATTCAAAGGCCCGGATGTTTGGAACAAGACCTATTATCCAAAAGCTGCAGATCATATCAATACAGAGAAAACATGGTATGTTGTTGATGCTACGGACAAAATTCTTGGAAGACTAGCATCAACAATTGCTATTCACATCCGAGGGAAAAACCTGGTGACCTATACACCCAGTGTGGACATGGGTGCCTTTGTAATTGTGGTAAATGCAGAAAAGGTTGCTGTATCCGGGAAAAAGAGAACCCAAAAGCTTTATAGGAGGCACTCTGGACGACCTGGTGGTATGAAAGTGGAGACATTTTCCCAGCTGCAGAACAGGATTCCTGAAAGAATTATTGAACATGCTGTTCGTGGCATGCTTCCTAAAGGGAGGCTTGGCAGGACACTATTCACCCACCTGAAGGTTTACAAGGGCCCAGATCATCCTCATGCGGCACAGAAGCCCATTGAATTGCCAATAAGGGATAAGAGAATACAGTTGCAGAAATAG 753 0.4396 MALLCGSASVTFLPSSFTPHKNATIKSTFVGSQLALPKLSLSSSSSSVCTHFPSAFRVHCQQDSSSVPQEQVPPQEQDPRFMCVEPEPRFKGPDVWNKTYYPKAADHINTEKTWYVVDATDKILGRLASTIAIHIRGKNLVTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFSQLQNRIPERIIEHAVRGMLPKGRLGRTLFTHLKVYKGPDHPHAAQKPIELPIRDKRIQLQK* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02105 250 NCBIfam 50S ribosomal protein L13 108 239 IPR005823 GO:0003735|GO:0005840|GO:0006412
Rops3g02105 250 ProSitePatterns Ribosomal protein L13 signature. 204 226 IPR023563 GO:0003735|GO:0005840|GO:0006412
Rops3g02105 250 FunFam 50S ribosomal protein L13 97 241 - -
Rops3g02105 250 PANTHER RIBOSOMAL PROTEIN L13 102 245 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops3g02105 250 Hamap 50S ribosomal protein L13 [rplM]. 114 249 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops3g02105 250 SUPERFAMILY Ribosomal protein L13 109 242 IPR036899 GO:0003735|GO:0005840|GO:0006412
Rops3g02105 250 Gene3D Ribosomal protein L13 98 246 IPR036899 GO:0003735|GO:0005840|GO:0006412
Rops3g02105 250 CDD Ribosomal_L13 114 227 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops3g02105 250 Pfam Ribosomal protein L13 112 230 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02105 116 249 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.206 2.67e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02105 K02871 - gmx:100305981 375.17