Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02101 ATGAAGATTCAGTGCAACGTGTGTGAAGCTGCAGAGGCTAAGGTTCTCTGTTGTGCAGATGAGGCAGCACTGTGTTGGGAATGTGATGAGAAGGTTCATGCAGCAAACAGGCTTGCAAGCAAGCACCAGAGAGTTCCTCTTTCAATCTCTGCCTCTCAGATGCCCAAGTGTGACATATGTCAGGAAACAGTTGGTTATTTCTTCTGTCTAGAGGATCGGGCATTACTTTGCAGGAATTGTGATGTGGCAATACACACAGCAAATGCCTTTGTCTCTGGTCATCAAAGGTTTCTGCTTACTGGTGTAAGAGTAGGCCTTGAAGCTACTGAGCCTGGTGGTTCCTTGTCTTCTGCGAAGTCAAATTCTGGGGAGAAAAATTCTGATGCTAAATCTTCATCCATCTCTAGAAATGTTTCCCCCATGCCCCAGCCATCCAATTTCAGTGAAGTGTTACCCATCCAAGTTGGAGGAATGGGGGAGTTTCCACCAACTAATGTGTCTTATGGTGGTGGTTCTACTGCTGGAAGCATCTCACACTGGCCCATTGAAGAATTTCTTGGGTTAAATGAATTCAGTCAGAATTATAATTTCATGGATGGATCATCTAAGGCTGACAGTGGTAAGCTTGGGGACTCTGATTCTCTTCTTTTAAGATCAAGTGAAGAGGAAATGGATGATGATGACTTTTCAGGGCGTTTTCCCGATTCATCCCGGACAGTTCCTCAGATCCCTTCCCCTCCTACAGCTTCAGGGTTATATTGGCCAAAAGACCCTGAACTTACATCTGACAATGCTATGTTTGTTCCTGACATATGCTTTTCTCACATGCAACAGCCTCACCATGCTCAGAATAATTTTATTCATTCAAGACGGAGGAGGCAACAGTAA 888 0.4459 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANRLASKHQRVPLSISASQMPKCDICQETVGYFFCLEDRALLCRNCDVAIHTANAFVSGHQRFLLTGVRVGLEATEPGGSLSSAKSNSGEKNSDAKSSSISRNVSPMPQPSNFSEVLPIQVGGMGEFPPTNVSYGGGSTAGSISHWPIEEFLGLNEFSQNYNFMDGSSKADSGKLGDSDSLLLRSSEEEMDDDDFSGRFPDSSRTVPQIPSPPTASGLYWPKDPELTSDNAMFVPDICFSHMQQPHHAQNNFIHSRRRRQQ* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02101 295 FunFam B-box zinc finger protein 22 1 93 - -
Rops3g02101 295 CDD Bbox1_BBX-like 5 47 - -
Rops3g02101 295 MobiDBLite consensus disorder prediction 110 149 - -
Rops3g02101 295 SMART bboxneu5 4 47 IPR000315 GO:0008270
Rops3g02101 295 SMART bboxneu5 52 99 IPR000315 GO:0008270
Rops3g02101 295 Gene3D Classic Zinc Finger 1 92 - -
Rops3g02101 295 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Rops3g02101 295 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Rops3g02101 295 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 277 - -
Rops3g02101 295 MobiDBLite consensus disorder prediction 113 149 - -
Rops3g02101 295 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Rops3g02101 295 MobiDBLite consensus disorder prediction 221 256 - -
Rops3g02101 295 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02101 Rops-Chr3 39608896 39613098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02101 1 293 C2C2-CO-like Transcription Factor Family AT1G78600 47.866 8.18e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Rops3g02101 zf-B_box 9.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02101 - - gmx:100808889 446.817