Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02090 ATGGACACCCCCACATTCCTCAGTGATCTCCCTCCCCTCAAGAGACTAAGATTTATGCAGCAACAACAACAACAAAAACAACATAGTACCTGTTCACCTTTACCCACCAAGAAACGTAAGGAGTCTAGAAATTCCACATTTTTTTCCGACCCACCATCTTCCACTGTTTTTTCACTACCAGCCAAGAAAAGGGTATGCGCCCTCCAACCCCAAAACGACGCCGTTTCACCCTTCGACCTAAACATCGAATATAAACCCCCTACCCCGGAAAAACCCCAACAACAAGAAGACACAATTGAAGACAACGAAGACGATGGCATTCTATGCTGCGTGTGCCAAAGCACCGACGGTGATACTGCGGACCCAATCGTTTTTTGCGACGGTTGCGACCTCATGGTTCACGCTTCTTGCTACGGTAACCCTCTCAAGAAGTGCATCCCCGAAGGTGACTGGTTCTGTGAACGGTGTCGTTTAGGGGAGAAGGAAAAAACTGATGACGTGGCGTGTTCATTTTGTCCGTGTAAGAAGGGTGCGATGAAAAGGACAACAGAGGGTGGGTGGGCCCACGTGGTGTGTGCATTGTTTGTGCCTGAGGTGTTTTTCTTGGACCCAGAAGGGAGGGAAGGGATTGATTGTTCTAAGGTTCCTAAGAAGAGGTGGTTGGAGAGGTGTTATGTTTGTGGGTGTTGTGAGGGTTGTGCTTTGGTGTGCTCTGAGCCAAAGTGTGGTTTGGCTTTTCATGTTACTTGTGCTTTGAAAGAGGATCTTTGTATTGAGTATAAGGAAGGGAAGAAGGGTGCTACCATTGTTGCTGGGTTCTGTAAGACCCATACTCAACTATGGGAAAAGCAACAGCTATCCGGGAAATACAAAATTGTTGCCGAGGATGATAAAAAGTAG 900 0.4722 MDTPTFLSDLPPLKRLRFMQQQQQQKQHSTCSPLPTKKRKESRNSTFFSDPPSSTVFSLPAKKRVCALQPQNDAVSPFDLNIEYKPPTPEKPQQQEDTIEDNEDDGILCCVCQSTDGDTADPIVFCDGCDLMVHASCYGNPLKKCIPEGDWFCERCRLGEKEKTDDVACSFCPCKKGAMKRTTEGGWAHVVCALFVPEVFFLDPEGREGIDCSKVPKKRWLERCYVCGCCEGCALVCSEPKCGLAFHVTCALKEDLCIEYKEGKKGATIVAGFCKTHTQLWEKQQLSGKYKIVAEDDKK* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02090 299 CDD PHD_BRPF_JADE_like 108 156 - -
Rops3g02090 299 MobiDBLite consensus disorder prediction 19 54 - -
Rops3g02090 299 CDD ePHD 169 277 - -
Rops3g02090 299 ProSiteProfiles Extended PHD (ePHD) domain profile. 166 278 IPR034732 -
Rops3g02090 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 162 IPR013083 -
Rops3g02090 299 PANTHER PHD FINGER PROTEINS 88 278 - -
Rops3g02090 299 Pfam PHD-zinc-finger like domain 168 277 - -
Rops3g02090 299 ProSiteProfiles Zinc finger PHD-type profile. 106 159 IPR019787 -
Rops3g02090 299 SUPERFAMILY FYVE/PHD zinc finger 97 166 IPR011011 -
Rops3g02090 299 Pfam PHD-finger 109 157 IPR019787 -
Rops3g02090 299 ProSitePatterns Zinc finger PHD-type signature. 109 156 IPR019786 -
Rops3g02090 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 280 IPR013083 -
Rops3g02090 299 SMART PHD_3 108 157 IPR001965 -
Rops3g02090 299 SMART PHD_3 223 278 IPR001965 -
Rops3g02090 299 MobiDBLite consensus disorder prediction 78 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02090 Rops-Chr3 39328415 39330323 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02090 14 299 C2H2 Transcription Factor Family AT3G14740 53.067 9.47e-106 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops3g02090 zf-HC5HC2H_2 1.7e-24 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02090 K11380 - gmx:100802652 423.32