Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02078 ATGCAAGCTATTCTACCTTGCAGGGAAGAGACCACTTCACCTTTGCTGGTTTGGACAATGGTGTTATTGGCCAAGTATCCTGAATGGCAAGAACGTGCAAGGCAGGAAGTTTTGCAAGTTTTTGGCAACCAAACTCCAAACTTTAATTGGTTAAGTCACCTTAAAATTGTGACCATGGTTTTGTATGAGGTTCTCAGGTTATATCCACCTGCAGTTTACTTCAATAGAGCTGTTCAAAAGGATGTGAAACTTGGAAACCTATCACTACCTGCCGGAGTACAAGTTTCCTTACCAATACTTTTGGTTCACCATGATCTTGATATCTGGGGTGATGATGCAAAGGAGTTCAAACCTGAAAGGTTCTCTGAAGGAATTGCAAAAGCCACGAAAGGCCAAGTTTCATATTTCCCATTTGGATGGGGTCCTAGAATATGCATGGGGCAAAACTTTGCCTTGTTGGAAGCGAAAATAGTGTTGTCATTGCTTCTGCAAAATTTCTCATTTGAGCTTTCTGCAGCCTATGCTCATGTTCCCACCTCTGTGCTTACTTTGCAGCCAAAACATGGGGCAAAAATCATTCTGCGGAAATTGTAA 594 0.4192 MQAILPCREETTSPLLVWTMVLLAKYPEWQERARQEVLQVFGNQTPNFNWLSHLKIVTMVLYEVLRLYPPAVYFNRAVQKDVKLGNLSLPAGVQVSLPILLVHHDLDIWGDDAKEFKPERFSEGIAKATKGQVSYFPFGWGPRICMGQNFALLEAKIVLSLLLQNFSFELSAAYAHVPTSVLTLQPKHGAKIILRKL* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02078 197 PANTHER CYTOCHROME P450 FAMILY MEMBER 10 190 - -
Rops3g02078 197 PRINTS E-class P450 group I signature 135 145 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g02078 197 PRINTS E-class P450 group I signature 16 42 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g02078 197 PRINTS E-class P450 group I signature 145 168 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g02078 197 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 138 147 IPR017972 GO:0005506|GO:0016705
Rops3g02078 197 PRINTS P450 superfamily signature 136 145 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g02078 197 PRINTS P450 superfamily signature 7 24 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g02078 197 PRINTS P450 superfamily signature 59 70 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g02078 197 PRINTS P450 superfamily signature 145 156 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g02078 197 Pfam Cytochrome P450 10 171 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g02078 197 Gene3D Cytochrome P450 8 197 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g02078 197 SUPERFAMILY Cytochrome P450 10 195 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02078 Rops-Chr3 39005429 39006309 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02078 9 197 Cytochrome P450 AT3G14680 62.963 1.02e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02078 - K17873 ag:BAL45207 320.087