Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02064 ATGACGGGGAAGAAGAGGGAGAAGGTGGCAAATGGTGAAGTGGAAGAGGAGGAGGAGGAGGAGGAGAAATGGAAGCAAATGACGTCGTGTTCGAGAACTTCATCTTCATCTTCTTCTTCTTCGGGAGGGAGAGAGTACGAGGTGGAGGACCTGAGGGATCGGTTGAAATCGTCGAGAGGGAGCAGATTCGATTTGATAGAGAACGAGTTTGGACTCAACAACTCAACTTGGAGGAAGTTCAGTCGCCAAGCACTTCTCCATGACTTCGTTATTCATCCTGAAAATAGGTTGTATCGGGCATGGACGAAGTTCATATTGTTATGGGCAGTGTACTCTTCCTTCTTCACCCCAATGGAGTTTGGATTTTTCCGTGGCCTGCCAGAGAATCTCTTCATACTGGACATTGTTGGACAAATAGCTTTTCTTGTGGACATAGTTTTGCAGTTCTTTGTTGCTTATAGAGACAGTCAGACCTATCGTATGATTTACAAGCGAACCCCTATTGCTCTGCGGTATCTAAAGTCTAGCTTTATCTTTGATTTTCTTGGATGTATGCCCTGGGACATCATCTACAAGGCTTGTGGAAGAAAAGAGGGAGTAAGGTACCTTTTGTGGATCAGGTTATATCGGGCGCAGAGAGTCAAGGATTTTTTCAAGAAGATGGAGAAGGATATACGTGTCAATTACATTATTACTAGGATTGTGAAACTTATAGTAGTTGAACTCTACTGCACCCACACAGCAGCCTGCATTTTCTACTATTTGGCTACTACACTACCTGAATCCAAAGAGGGGTACACATGGATAGGAAGCTTAAAACTCGGTGACTATAGTTATTCTCATTTCAGAGAAATTGATATATGGAAGCGCTACACGACATCTTTGTATTTTGCTATTGTTACAATGGCTACTGTCGCAACTGGTGAAGTTTTTCTAGGCTATGGAGATATGCATGCAGTAAATATGAGGGAGATGATATTCATAATGATATATGTTTCGTTTGACATGATTCTTGGTGCTTATTTGATTGGTAACATGACAGCTTTGATAGTCAAGGGATCAAAGACTGAAAAGTTTAGGGACAAGATGACAGATCTTATGAAATATATGAACAGGAATAGACTGGGAAGGGATATCCGTGAACAAATAAAAGGCCATGTGCGCTTACAGTATGAGAGCAGCTACACTGAAGCTGCTGTCATTCAGGACATTCCCATTTCTATTCGAGCTAAGATATCCCAAACATTGTATTTGCCATACATTGAAAAGGTTAATCTTTTTAGAGGCTGCTCTTCAGAATTCATCAATCAGATTGTTATTTGGCTCCATGAGGAATTCTTTCTTCCCGGGGAAGTTATAATGGAACAAGGAAATGTTGTAGATCAACTATATTTTGTCTGTCATGGTGTGCTGGAGGAAGTAGGCACAGCTGAAGATGCGTCTGAAGAAACTGTTTCACTTCTACAGCCTAATAGTTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTTCGCGTTTGTGAACTGTGTAGGGTCCTACGGCTTGATAAGCAATCATTTACAAATATCCTGGATATATACTTTTATGATGGAAAGAAAGTATTAGACAACCTTCTGGAGGGAAAAGAGTCTCTTCGAGGTAAGCAATTGGAGTCAGACATCACCTTTCATATGGAAAAGATAGAAGCTGAACTTGCTTTGAAGGTCAATAGAGCATCTTTTAATGGGGATCTGTATCAGCTAAAATGTTTGGTTCGAGCTGGAGCTGATCCCAGCAAGACAGATTATGATGGAAGGTCACCTCTGCATCTTGCGGCATCTAGAGGATATGAAGATATCACACTTTTCCTTATTCAAGAAGGTGTAAACGTCAACATCAAAGATAACTTCGGGTACACACCCTTACTTGAAGCCGTTAAGAATGGACATGATCAGGTTGCTTCTTTACTTGTTAGAGAAGGGGCCTCTATGAACATAGAAAATGCTGGTAGTTTCTTATGTATAGCAGTCGCAAGGGGAGATTCGGATTATCTTAAAAGGCTTTTATCTAATGGAATGGATCCAAATTTGAAAGATTATGATTACCGAACCCCACTTCATATTGCTGCAGCTGAAGGTTTACACTTCATGACAAAGCTGCTATTAGAATCTGGAGCTAGTGTTTTTACAAAAGACAGATGGGGAAATACCCCGCTTGATGAGGCCCGGAAGTGTGGAAATAAGAATCTGATCAAGCTATTGGAAGATGCAAAATCTGCTCAGTTGTCAGAATTCCCATATCCCCCTCAAGAATTTACAGATCATATGCACAGAAAGAAGTGCGCAGTGTTCCCTTTCCACCCGTGGGATCCAAATGAACAAAGACGGAATGGAATTGTATTATGGGTTCCACACACCATTGAAGAGCTGATCAAAACAGCAGCAGAGCAGATAGGATTTTCTAGCGATTCTTGTATTTTATCAGAAAATGCTGGTAAAATTACTGATGTGGACATGATTAAGGATGATCAGAAGCTGTATTTAGTCCATGAAACACGTTAG 2556 0.4081 MTGKKREKVANGEVEEEEEEEEKWKQMTSCSRTSSSSSSSSGGREYEVEDLRDRLKSSRGSRFDLIENEFGLNNSTWRKFSRQALLHDFVIHPENRLYRAWTKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLVDIVLQFFVAYRDSQTYRMIYKRTPIALRYLKSSFIFDFLGCMPWDIIYKACGRKEGVRYLLWIRLYRAQRVKDFFKKMEKDIRVNYIITRIVKLIVVELYCTHTAACIFYYLATTLPESKEGYTWIGSLKLGDYSYSHFREIDIWKRYTTSLYFAIVTMATVATGEVFLGYGDMHAVNMREMIFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDIREQIKGHVRLQYESSYTEAAVIQDIPISIRAKISQTLYLPYIEKVNLFRGCSSEFINQIVIWLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGTAEDASEETVSLLQPNSSFGEISILCNIPQPYTVRVCELCRVLRLDKQSFTNILDIYFYDGKKVLDNLLEGKESLRGKQLESDITFHMEKIEAELALKVNRASFNGDLYQLKCLVRAGADPSKTDYDGRSPLHLAASRGYEDITLFLIQEGVNVNIKDNFGYTPLLEAVKNGHDQVASLLVREGASMNIENAGSFLCIAVARGDSDYLKRLLSNGMDPNLKDYDYRTPLHIAAAEGLHFMTKLLLESGASVFTKDRWGNTPLDEARKCGNKNLIKLLEDAKSAQLSEFPYPPQEFTDHMHRKKCAVFPFHPWDPNEQRRNGIVLWVPHTIEELIKTAAEQIGFSSDSCILSENAGKITDVDMIKDDQKLYLVHETR* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02064 851 SUPERFAMILY Ankyrin repeat 576 754 IPR036770 -
Rops3g02064 851 Pfam Ankyrin repeats (3 copies) 671 753 IPR002110 GO:0005515
Rops3g02064 851 Pfam Ankyrin repeats (3 copies) 577 665 IPR002110 GO:0005515
Rops3g02064 851 Gene3D - 101 352 - -
Rops3g02064 851 ProSiteProfiles Ankyrin repeat region circular profile. 699 731 - -
Rops3g02064 851 ProSiteProfiles Ankyrin repeat profile. 602 634 IPR002110 GO:0005515
Rops3g02064 851 Gene3D Helix hairpin bin 353 409 - -
Rops3g02064 851 SMART ANK_2a 699 728 IPR002110 GO:0005515
Rops3g02064 851 SMART ANK_2a 602 631 IPR002110 GO:0005515
Rops3g02064 851 SMART ANK_2a 732 762 IPR002110 GO:0005515
Rops3g02064 851 SMART ANK_2a 635 664 IPR002110 GO:0005515
Rops3g02064 851 SMART ANK_2a 666 695 IPR002110 GO:0005515
Rops3g02064 851 MobiDBLite consensus disorder prediction 1 48 - -
Rops3g02064 851 Gene3D - 668 762 IPR036770 -
Rops3g02064 851 SMART cnmp_10 426 544 IPR000595 -
Rops3g02064 851 Pfam KHA, dimerisation domain of potassium ion channel 777 846 IPR021789 -
Rops3g02064 851 ProSiteProfiles Ankyrin repeat region circular profile. 602 634 - -
Rops3g02064 851 MobiDBLite consensus disorder prediction 28 44 - -
Rops3g02064 851 Gene3D - 563 667 IPR036770 -
Rops3g02064 851 Gene3D Jelly Rolls 410 547 IPR014710 -
Rops3g02064 851 SUPERFAMILY Voltage-gated potassium channels 93 351 - -
Rops3g02064 851 FunFam Potassium channel SKOR 99 351 - -
Rops3g02064 851 ProSiteProfiles Ankyrin repeat profile. 666 698 IPR002110 GO:0005515
Rops3g02064 851 CDD CAP_ED 426 532 IPR000595 -
Rops3g02064 851 ProSiteProfiles Ankyrin repeat region circular profile. 635 666 - -
Rops3g02064 851 ProSiteProfiles Ankyrin repeat profile. 699 731 IPR002110 GO:0005515
Rops3g02064 851 Pfam Ion transport protein 99 351 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops3g02064 851 Pfam Cyclic nucleotide-binding domain 446 530 IPR000595 -
Rops3g02064 851 PANTHER POTASSIUM CHANNEL AKT1 69 848 IPR045319 GO:0005249|GO:0006813
Rops3g02064 851 FunFam Gated outwardly-rectifying K+ channel 641 766 - -
Rops3g02064 851 FunFam Potassium channel KAT2 414 551 - -
Rops3g02064 851 PRINTS Ankyrin repeat signature 603 618 IPR002110 GO:0005515
Rops3g02064 851 PRINTS Ankyrin repeat signature 651 665 IPR002110 GO:0005515
Rops3g02064 851 ProSiteProfiles KHA domain profile. 778 851 IPR021789 -
Rops3g02064 851 ProSiteProfiles cAMP/cGMP binding motif profile. 426 529 IPR000595 -
Rops3g02064 851 ProSiteProfiles Ankyrin repeat profile. 635 667 IPR002110 GO:0005515
Rops3g02064 851 SUPERFAMILY cAMP-binding domain-like 354 543 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02064 Rops-Chr3 38735032 38745677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02064 674 752 Ion Channels AT5G37500 36.634 5.15e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02064 K21867 - gmx:100814385 1461.43