Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02044 ATGAATAAGAGGTCATTCAAGTGTGCTTGGGTGCTTGACAAGCTCAAGGTTGAGCATGAAAGAGGGCTTACCATTGATATTGCGCTGTGGAAGTTTGAGACCACCAAGTACTACTACACTGTCATTGATGCTCCGGGGCATAGGGGTTTCATTAGGAGTATGACTACCACACCCCAAGCACCGTGCTACCATGCTACAAATATGCCCCTGCCAAGTCGAAAATATCGTGAACATGGAAGGAAACTTGGATTAGAGGGTTTGCAAACTTACTTGGTAGCTCTTTTGTCAAGGTGTTTCAAACATGCTGGCGAGTCATACGTTAAAGTGCCTTTCTTAGGAGCTGTTTCATACCTGACTATGGTTGTTTCTCCATTCTGTACAATGCTTGCCGTTCTTTGGGCAGTTTATCGTAAGGAATCATTTGCTTGGATTGGTCAAGATATACTTGGAATCGCGCTGATAAGCACATCCCGCGGTGATAGAAGTGGAGAAGATGGTATTCCAATGTTGCTGAAGTTTCCACGCACGTTTGATCCATGGGGTGGTTACAGCATTATAGGTTTTGGAAACATCCTTTTACCGAGAATGCCGGTGGCATTATCGTTCGGATATGATTGGTTGGCAAATAAGAACTTTGCAAATGGATACTTCTTGTGGGAAATGTTTGCCTATGGCTTCTTCTTACCACATCGTGGCACTTAG 702 0.4416 MNKRSFKCAWVLDKLKVEHERGLTIDIALWKFETTKYYYTVIDAPGHRGFIRSMTTTPQAPCYHATNMPLPSRKYREHGRKLGLEGLQTYLVALLSRCFKHAGESYVKVPFLGAVSYLTMVVSPFCTMLAVLWAVYRKESFAWIGQDILGIALISTSRGDRSGEDGIPMLLKFPRTFDPWGGYSIIGFGNILLPRMPVALSFGYDWLANKNFANGYFLWEMFAYGFFLPHRGT* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02044 233 Pfam Elongation factor Tu GTP binding domain 9 57 IPR000795 GO:0003924|GO:0005525
Rops3g02044 233 Pfam Signal peptide peptidase 165 226 IPR007369 GO:0004190|GO:0016020
Rops3g02044 233 Pfam Signal peptide peptidase 83 154 IPR007369 GO:0004190|GO:0016020
Rops3g02044 233 Gene3D - 1 61 IPR027417 -
Rops3g02044 233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 57 IPR027417 -
Rops3g02044 233 PANTHER SIGNAL PEPTIDE PEPTIDASE 82 156 IPR007369 GO:0004190|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02044 Rops-Chr3 36995517 36996430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02044 1 62 Eukaryotic Initiation Factors Gene Family AT1G07930 80.952 2.64e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02044 K09597 - gmx:100796300 226.868