Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02040 ATGATGAGTGCCTCCTTCTTTCAATTTCCCCTTCTCTTTCTCCTTGCTCTTTGCTTTGCATCATTTGCTTTTGGAGCCACTCTGCAAGAAGATGAAGTGCAAGCCCTAAAAGACATAGCTAACAGGATTGGGAAGAAGAATTGGGACTTCAGTGTAGATCCATGTGGTGGACAGAGAAACTGGACATCACCAACTCAATTGCAAGGTTCAGAAAATGCAGTGACCTGTAATTGTACTTTTGCCAGTCACACTGTTTGCCATGTTGTCAGCATTGTTTTGAAAGCACAGAATCTTTCTGGTACTACCCCACTGGAGCTTGTCAGGTTGCCTTATCTCCAAGAAATTGACTTCACCCTCAACTACCTTAATGGTACAATCCCTAAAGAATTGGCCACCTTAAATCTTGTCAACATTTCCTTTTATGGAAACCGCCTAACGGGTCCAATCCCAAAGGAGCTTGGAAACATCACCACTCTCAAAAGTTTGGTACTGGAGTTCAATCAATTATCTGGAAATCTTCCTCCAGAGCTTGGGAATCTTACCCAGATTGAAAGACTGCTTCTTACCTCCAACAATTTCACTGGAGAGTTACCTGCAACCTTTTCTAAGCTCACTACATTGAAGCATGTTCGAATCGGCGACAATCAATTCTCTGGAGCAATGCCCAATTTCATACAGAGCTGGATAAATCTTGAGATCCTTGTGATCCAAGGGAGTGGTTTGAGTGGGCCAATTCCTTCTGGAATTTCACTTCTGACCAACCTTACTGACTTGAGAATTACTGACTTGAATGGATCTGATTCAACTTTTCCACAACTGAATAATATGACAAATTTGGAAACGCTGATATTGAGGAGTTGCAATATTATTGGAGCCTTGCCTGAATATCTTGGAAAATTGACTACTTTGCAAGTATTAGACCTCAGCTACAACAAAATAAGTGGACCAATTCCGAGCAGTTTTGATGGTCTACAGAACATGAATATGCTATTTTTAGCTGGGAATCTTCTTACTGGATCGCTGCCTCAGTGGATAGATAAACCAGACTTTGTTGATCTCTCATATAACAACTTCAGCATCAGAAACATAGAGCAGCTGACTTGTCAACAGGGAAGCGTGAACTTGTTCGCATCCTCTTTGAATGGAAACAGCTTAGGAAATGTTTCATGTTTGTCGAACATTCAGTGTTCAAAAACTTGGTACTCTCTCTATATAAATTGTGGTGGAAAGCTTGTAACTTATAATGGAAATAAGACATATGATGTTGATGCAAGTGAGATGGGACCTGCAAGGTTTCGTCAAACTGGAACAAACTGGGCACTTATCACTGCTGGTCACTTCTTTGATAGTGGTCGCTCTGACTACTACACATGGTCTAATAACACAACAAGGCTTGCTGTGGCCAATGCTGAACTGTACACGGATGCAAGAGTTTCTCCAAATTCTCTGACTTACTATGGCTTTTGCATGGGAAATGGAAACTACACAGTGAATCTCCATTTTGCAGAAATAATGTTCACTGATGATAAAACATATAGCAGCCTTGGAAGGCGTGTATTTGACATCTACATTCAGGGAAAGTTGGTGGTTAAGGATTTCAATATTGCAAAAGAAGCAGGAGGTATTGGTAAGGCAGTCATAAAAAATTTCACTGCTGTTGTGACTAGTAAGGCCTTGGAGATCCGCTTATACTGGGCAGGGAAAGGGACAACTTCTATCCCATTTGGATCAGTATATGGCCCTCTTATATCAGCTATATCTGTTGATCCTGAGTTTACTCCCCCATTGGAAAATAGCAGTAGCATATCCGTAGGGGTTGTGGTTGCAATTGTGGCTGCTGGAGCAGTTATTATCATCTTGGTATTTGGTATACTGTGGTGGAAGGGTTGTTTAGGACTGAAAAGACCACTGGCCAGAGAGCTAAAGGGTTTAGATTCACAAACTGGTTTATTTACCCTTCTACAAATCAAAGCAGCAACAAACAACTTTGACAAAGCCTTCAAGATTGGAGAAGGAGGATTTGGTCCTGTTTACAAGGGCGTTCTGTCAAATGGCACTGTAGTAGCAGTTAAGCAGCTTTCTTCTAAATCAAGGCAAGGGAATCGTGAATTTATAAATGAGATAGGTCTGATTTCTGCTTTGCAACACCCTAATCTAGTTAAGCTCTATGGCTGTTGTATGGAGGAGGATCAATTGCTGTTGATATATGAATACATGGAAAATAATAGTCTTGCTCATGCTTTATTTGTTACAAATGATGACCCTGAGAAATGTCAATTGAGATTGGATTGGCAAACAAGGCAGAGGATTTGTGTTGGTATTGCTAAAGGTTTGGCTTACCTTCACGAAGAGTCAAGACTGAAAATCGTTCATAGGGACATCAAGGCTACTAATGTGTTACTGGATAAAGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTGAATGAAGAGGACAAAACCCACATGAACACCAGAATAGCTGGCACTTATGGGTACATGGCTCCTGAGTATGCAATGCATGGTTATTTGACAGACAAAGCAGATGTCTATAGTTTTGGAATTGTTGCATTGGAAATTGTTATTGGGATGAGCAACAACATTAGGCAGCCTATGGAAGAATGTTTCTCTCTTCTTGATTGGGTGCATCTCTTGAAAGAAAGAGGTAATCTAATGGAGCTTGTGGATAAGAGGTTGGGTGAAGACATCAACAAAGAGGAGGTAATGGTGATGATTAAAGTAGCTCTTTTATGCACCAATGTCTCTCCATCACTCAGGCCAACCATGTCTTCAGTGGTCAACATGCTTGAAGGTAGAACTGTTGTTCAAGAGGTGGTGTCAGACACAACAGAGGTATTGGATGATAAGAAATTTGAGATGATGAGACAGTATTACCAACAGAGAGGAGAAAAAAACATGATTGAGACTCAGAGTGAGAGTGTCCCAACAGATGAAACTTCTGTACTTAAATCTGATAGGGATTCTTTTTTTGAGGAAATCAAAAGTTAG 3015 0.4066 MMSASFFQFPLLFLLALCFASFAFGATLQEDEVQALKDIANRIGKKNWDFSVDPCGGQRNWTSPTQLQGSENAVTCNCTFASHTVCHVVSIVLKAQNLSGTTPLELVRLPYLQEIDFTLNYLNGTIPKELATLNLVNISFYGNRLTGPIPKELGNITTLKSLVLEFNQLSGNLPPELGNLTQIERLLLTSNNFTGELPATFSKLTTLKHVRIGDNQFSGAMPNFIQSWINLEILVIQGSGLSGPIPSGISLLTNLTDLRITDLNGSDSTFPQLNNMTNLETLILRSCNIIGALPEYLGKLTTLQVLDLSYNKISGPIPSSFDGLQNMNMLFLAGNLLTGSLPQWIDKPDFVDLSYNNFSIRNIEQLTCQQGSVNLFASSLNGNSLGNVSCLSNIQCSKTWYSLYINCGGKLVTYNGNKTYDVDASEMGPARFRQTGTNWALITAGHFFDSGRSDYYTWSNNTTRLAVANAELYTDARVSPNSLTYYGFCMGNGNYTVNLHFAEIMFTDDKTYSSLGRRVFDIYIQGKLVVKDFNIAKEAGGIGKAVIKNFTAVVTSKALEIRLYWAGKGTTSIPFGSVYGPLISAISVDPEFTPPLENSSSISVGVVVAIVAAGAVIIILVFGILWWKGCLGLKRPLARELKGLDSQTGLFTLLQIKAATNNFDKAFKIGEGGFGPVYKGVLSNGTVVAVKQLSSKSRQGNREFINEIGLISALQHPNLVKLYGCCMEEDQLLLIYEYMENNSLAHALFVTNDDPEKCQLRLDWQTRQRICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLNEEDKTHMNTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVIGMSNNIRQPMEECFSLLDWVHLLKERGNLMELVDKRLGEDINKEEVMVMIKVALLCTNVSPSLRPTMSSVVNMLEGRTVVQEVVSDTTEVLDDKKFEMMRQYYQQRGEKNMIETQSESVPTDETSVLKSDRDSFFEEIKS* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02040 1004 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 270 396 - -
Rops3g02040 1004 SUPERFAMILY L domain-like 84 358 - -
Rops3g02040 1004 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 633 738 - -
Rops3g02040 1004 Gene3D Ribonuclease Inhibitor 29 191 IPR032675 -
Rops3g02040 1004 Pfam Protein tyrosine and serine/threonine kinase 668 938 IPR001245 GO:0004672|GO:0006468
Rops3g02040 1004 ProSiteProfiles Protein kinase domain profile. 663 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02040 1004 Pfam Malectin domain 402 586 IPR021720 -
Rops3g02040 1004 SUPERFAMILY Protein kinase-like (PK-like) 646 946 IPR011009 -
Rops3g02040 1004 MobiDBLite consensus disorder prediction 988 1004 - -
Rops3g02040 1004 FunFam Putative LRR receptor-like serine/threonine-protein kinase 739 950 - -
Rops3g02040 1004 Gene3D Ribonuclease Inhibitor 262 396 IPR032675 -
Rops3g02040 1004 Pfam Leucine rich repeat 277 337 IPR001611 GO:0005515
Rops3g02040 1004 Gene3D Phosphorylase Kinase; domain 1 634 738 - -
Rops3g02040 1004 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 264 - -
Rops3g02040 1004 MobiDBLite consensus disorder prediction 973 987 - -
Rops3g02040 1004 Gene3D Transferase(Phosphotransferase) domain 1 739 961 - -
Rops3g02040 1004 CDD STKc_IRAK 669 940 - -
Rops3g02040 1004 Gene3D Ribonuclease Inhibitor 192 261 IPR032675 -
Rops3g02040 1004 MobiDBLite consensus disorder prediction 973 1004 - -
Rops3g02040 1004 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 970 - -
Rops3g02040 1004 SMART serkin_6 663 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02040 1004 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 400 591 - -
Rops3g02040 1004 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 32 191 - -
Rops3g02040 1004 Gene3D - 400 590 - -
Rops3g02040 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02040 Rops-Chr3 36910419 36925652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02040 22 988 Receptor kinase-like Gene Family AT1G53420 53.901 0.0 999
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g02040 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02040 - - gmx:100798947 1456.04