Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02039 ATGACTTGTTGCTCTCATCTTTTCAGAAAAAAAGGGTCTTCCTCAGCCACACGATTAACCGGAATTGATATAGATATTTCAGAAATTCAGAATGTCAAACTTTACACTTACAAGGAATTGCGAATTGCCACTGAAGGTTTTAGTCGTGCAAACAAGATAGGGCAGGGAGGTTTTGGATCAGTCTATAAGGGAAAGCTGAATAATGGTTCTTTGGTAGCTATAAAGGTTTTATCAGCAGAATCAAGACAAGGGGTTCGGGAGTTCTTGACAGAGATCAAGGTGATCACTAGTATAGAGCATGAGAATCTAGTTAAGTTGTATGGATGCTGTGTGGAAAACAACCACAGGATCTTGGTATATGGCTATCTTGAGAATAACAGCCTAGCACAAACACTTCTTGGTGCAGGACATAGTGGTATCCAATTCAGTTGGCATATGAGGAGGAACATTTGCATAGGTGTTGCTCGGGGTCTTGCATTCCTTCATGAGGAGGTTCGGCCACATATTATTCATAGAGACATAAAAGCAAGCAATGTACTACTTGACAAAGACCTCCAGCCAAAAATTTCAGATTTTGGCCTTGCAAAGCTCATTCCACCAAACCTTACACATATTAGTACACGGGTCGCTGGAACAGCTGGTTATCTGGCACCTGAGTATGCAATACGAAATCAAGTGACAAGAAAATCAGATATCTATAGTTTTGGAGTTCTACTATTAGAAATTGTTAGTGGGAGGCCTAACACAAACAGACGTTTACCTGTTGAAGAACAATATCTTCTTACAAGGGCATGGGATTTGTATGAGAGCGGAGAGCTAGAAAGATTGGTGGATTCTTTTCTAGAAAGAGACTTCAATATTGAGGAAGCAGTCAGATTTTGTAAGATTGGTCTTCTTTGCACACAAGATTCTCCTCAGCACCGGCCATCTATGTCCACTGTGCTTGACATGCTTGTAGGAAAAAAGGATGTAAATGAGGAGAATGCTACAAAACCAGGCATGATATTTGAATTTGTGCAAGCCAATGACGAAGGGAAACAAAAATGCAAGGTTGAAGTGGAAAGTACTTCTTTGTTGGCTGGTTCAGGGAAGCAAGATGATTCATCTACATCAGGAACTGTTAGCTCTTTTGCTACCATGACCTTTACTGCAATTTCTGATCGAAGCCATTAA 1173 0.4049 MTCCSHLFRKKGSSSATRLTGIDIDISEIQNVKLYTYKELRIATEGFSRANKIGQGGFGSVYKGKLNNGSLVAIKVLSAESRQGVREFLTEIKVITSIEHENLVKLYGCCVENNHRILVYGYLENNSLAQTLLGAGHSGIQFSWHMRRNICIGVARGLAFLHEEVRPHIIHRDIKASNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTAGYLAPEYAIRNQVTRKSDIYSFGVLLLEIVSGRPNTNRRLPVEEQYLLTRAWDLYESGELERLVDSFLERDFNIEEAVRFCKIGLLCTQDSPQHRPSMSTVLDMLVGKKDVNEENATKPGMIFEFVQANDEGKQKCKVEVESTSLLAGSGKQDDSSTSGTVSSFATMTFTAISDRSH* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02039 390 FunFam cold-responsive protein kinase 1 18 122 - -
Rops3g02039 390 Pfam Protein kinase domain 48 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02039 390 SUPERFAMILY Protein kinase-like (PK-like) 25 319 IPR011009 -
Rops3g02039 390 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 330 - -
Rops3g02039 390 Gene3D Transferase(Phosphotransferase) domain 1 123 334 - -
Rops3g02039 390 SMART serkin_6 47 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02039 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Rops3g02039 390 Gene3D Phosphorylase Kinase; domain 1 22 122 - -
Rops3g02039 390 CDD STKc_IRAK 53 318 - -
Rops3g02039 390 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Rops3g02039 390 ProSiteProfiles Protein kinase domain profile. 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02039 390 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02039 Rops-Chr3 36899733 36903497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02039 23 326 Receptor kinase-like Gene Family AT1G07650 54.369 6.88e-106 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g02039 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02039 - - gmx:100801735 681.789