Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02031 ATGGAAGACGATGGTTTTAGTTCTTCTGACGCATATGAATGTCCTTTAAGCCCTGGCTTTTTCAATATTAGCAACCCCACACTTGACGATTTATCCAATACTAGCAACAATGTACCCACTACACTGCCCCATCAAAATTATCAACAACACAGTAATGAGCCTCTTCCAAGATCCAATGATCAAAGCTCTTTCAGTATGAGCAACCCCACTTTAGCCGATTTATCCAATAACAATGTTGCACCCACTACACTGCTCCAACAAAATTATCAACAGAGCAATGACCCTCTTCCAAGATCCAATGATCAAAGCCTTTTCAACATGAGCAACCCCACATTAACCGATTTATCCAATAATAATGTACCCTTTACACTGCCCCAACAAAATTATCATGGAGTTCATCACAGTAATGATCAAAGCATTTTCAATATGAGCAACCCCACTTTAGCCAATTTATCCAATAATAATGTTGTTGAACCCATTGAAGTGCCCCTACAAAATCCTCTTGGAGTTCAACAGGGTAATGATCCCTTTTTAATAAGATCCAATCATCCAAATATTTTCAATATGAGCAACCCCACTCTTGGTGAGTCATCCAATGGTAATAATACTGTTGTACCACCCACTGTAGTGCCCCAACAAAATCAACATCTTGGAGTTCAACAGGGTTATGATGAAACCTTTTTAAGATTCAATAATCCAAACATTTTCAATATGAGCAACCTTACTGTTGGAGAGTCATCTAGTAGTAATGTACTACCCGCTGCACAGCCCCATCAAAATCATCATGGAGTTAATAATCTCTTTCCAGATTCAATGGTTCAAGATCAGTATGTGCACAACAATTTTTCTTTGGGAGGAGGAGCAGGGAACATGGAAACGGGCAGTACATCACAATTGCATGGGGATCAAAATCAGCCAGCAAATCAGAATCTGGGGTCACAGAATATCAACCAAATGATCCCACTTCATTATTGGCCAGTGACACCAGTTCCACTTTTGTGCAGTTCCTGTCAAGTTCTGAGAGAAATAGTTCACACTAACGGTACTACCTTTGAAAAGCTCCAGGTTCATGGAAGGCGTGGGATTATTACCCATGCAATTCACCATCAAAATATTACTGCAGATGCTTCAAACAACAACGTTTATTATGAAATGATTGATTTTTACCATAGAACCATTGACGAAGTCAAGGTTTTCCTAGAGCGGTATTACGAGGAGCGTAATTCAGCAGGCTACATACTTTTGGAAGATCCGATGTGTGCATATTATGATGCTCTAAGCACTGGACTGGACCGGAATGAAGATTTGAATGAGGAGGACGATGATAATATGGATCAAAATGATTCAGAAGAAGAAGCACAAGATCATGAATTGGAACAACAGGCAGAAAATGGAACAACGACTTCTTGGCCTCCCCGTGCGATACAGAGGGAGAGGGCAGCAAATACGACATGGAGGGATTTAAGCGACTACTTTCATCTGCCAATTGAGAAAGTAGAGAAACAAGTGCACTTATGTTCCTCTGTCCTCAAGAAAATTTGCCGTAGGGCAGGAGTACCACGATGGCCTTACAGAAAGGTGAAAAGCCTTTGGAGGCAGATCTTAATCCTCAGAGCTGCATTACCTTCACAAGATTCAATGACAAGGGCAACAACTCAAGCGGAAATTAACATACTTCAACAAGAAATGGTTCGCTGTTGTGGTGGAATTGCCCCAACCAATTTGCCTGACAATCTCTCTTCTTTTAATTAG 1752 0.407 MEDDGFSSSDAYECPLSPGFFNISNPTLDDLSNTSNNVPTTLPHQNYQQHSNEPLPRSNDQSSFSMSNPTLADLSNNNVAPTTLLQQNYQQSNDPLPRSNDQSLFNMSNPTLTDLSNNNVPFTLPQQNYHGVHHSNDQSIFNMSNPTLANLSNNNVVEPIEVPLQNPLGVQQGNDPFLIRSNHPNIFNMSNPTLGESSNGNNTVVPPTVVPQQNQHLGVQQGYDETFLRFNNPNIFNMSNLTVGESSSSNVLPAAQPHQNHHGVNNLFPDSMVQDQYVHNNFSLGGGAGNMETGSTSQLHGDQNQPANQNLGSQNINQMIPLHYWPVTPVPLLCSSCQVLREIVHTNGTTFEKLQVHGRRGIITHAIHHQNITADASNNNVYYEMIDFYHRTIDEVKVFLERYYEERNSAGYILLEDPMCAYYDALSTGLDRNEDLNEEDDDNMDQNDSEEEAQDHELEQQAENGTTTSWPPRAIQRERAANTTWRDLSDYFHLPIEKVEKQVHLCSSVLKKICRRAGVPRWPYRKVKSLWRQILILRAALPSQDSMTRATTQAEINILQQEMVRCCGGIAPTNLPDNLSSFN* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02031 583 MobiDBLite consensus disorder prediction 283 312 - -
Rops3g02031 583 MobiDBLite consensus disorder prediction 434 457 - -
Rops3g02031 583 ProSiteProfiles RWP-RK domain profile. 466 550 IPR003035 -
Rops3g02031 583 MobiDBLite consensus disorder prediction 432 474 - -
Rops3g02031 583 PANTHER PROTEIN RKD4 322 567 IPR044607 GO:0003700
Rops3g02031 583 MobiDBLite consensus disorder prediction 90 110 - -
Rops3g02031 583 MobiDBLite consensus disorder prediction 27 76 - -
Rops3g02031 583 Pfam RWP-RK domain 484 530 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02031 Rops-Chr3 36788443 36791474 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02031 488 530 AtRKD Transcription Factor Family AT5G66990 46.512 6.42e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Rops3g02031 RWP-RK 5.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02031 - - tpra:123895752 321.627